PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 39384
Common NameSELMODRAFT_39381, SELMODRAFT_39384
Organism
Selaginella moellendorffii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella
Family HSF
Protein Properties Length: 92aa    MW: 10911.2 Da    PI: 9.6021
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
39384genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind117.11e-362922101
                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS
  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 
                   Fl+k+y++++d++ + ++sws++g+sfvv+++ efa+++Lp+yFkh+nf+SFvRQLn+YgF+kv+ ++         weF++++F +g+++ll++i 
         39384   2 FLTKTYDMIDDASSDPVVSWSSKGTSFVVWNPPEFARDLLPQYFKHNNFSSFVRQLNTYGFRKVDPDR---------WEFANEEFVRGDRSLLRNIT 89 
                   9****************************************************************999.........******************** PP

                   XXX CS
  HSF_DNA-bind  99 rkk 101
                   rkk
         39384  90 RKK 92 
                   *96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF467852.86E-35191IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004152.6E-57191IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.109.6E-39191IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000564.7E-21225IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004471.5E-33291IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000564.7E-214052IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043404165IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000564.7E-215365IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 92 aa     Download sequence    Send to blast
PFLTKTYDMI DDASSDPVVS WSSKGTSFVV WNPPEFARDL LPQYFKHNNF SSFVRQLNTY  60
GFRKVDPDRW EFANEEFVRG DRSLLRNITR KK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A7e-2629120120Heat shock factor protein 1
5d5u_B8e-2629129129Heat shock factor protein 1
5d5v_B8e-2629129129Heat shock factor protein 1
5d5v_D8e-2629129129Heat shock factor protein 1
5hdg_A7e-2629110110Heat shock factor protein 1
5hdn_A7e-2629110110Heat shock factor protein 1
5hdn_B7e-2629110110Heat shock factor protein 1
5hdn_C7e-2629110110Heat shock factor protein 1
5hdn_D7e-2629110110Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtDNA-binding protein that specifically binds heat shock promoter elements (HSE) and activates transcription. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002994026.29e-63heat stress transcription factor A-2e isoform X2
SwissprotQ401523e-47HSF8_SOLLC; Heat shock factor protein HSF8
TrEMBLD8SX173e-61D8SX17_SELML; Uncharacterized protein (Fragment)
STRINGEFJ049084e-62(Selaginella moellendorffii)
STRINGEFJ110064e-62(Selaginella moellendorffii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP9617233
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32330.15e-49heat shock transcription factor A1D
Publications ? help Back to Top
  1. Zhu B, et al.
    Identification and characterization of a novel heat shock transcription factor gene, GmHsfA1, in soybeans (Glycine max).
    J. Plant Res., 2006. 119(3): p. 247-56
    [PMID:16570125]
  2. Banks JA, et al.
    The Selaginella genome identifies genetic changes associated with the evolution of vascular plants.
    Science, 2011. 332(6032): p. 960-3
    [PMID:21551031]
  3. Cai SY, et al.
    HsfA1a upregulates melatonin biosynthesis to confer cadmium tolerance in tomato plants.
    J. Pineal Res., 2017.
    [PMID:28095626]
  4. Zhou J, et al.
    Heat Shock Factor HsfA1a Is Essential for R Gene-Mediated Nematode Resistance and Triggers H2O2 Production1.
    Plant Physiol., 2018. 176(3): p. 2456-2471
    [PMID:29339397]