PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

39429

Common Name

ABI3C-1, SELMODRAFT_451619

Organism

Selaginella moellendorffii

Taxonomic ID

88036

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella

Family

Protein Properties

Length: 83aa MW: 9837.5 Da PI: 9.13

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
39429	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	51.1	2.5e-16	1	81	5	81
-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEE.TTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEE CS B3 5 ltpsdvlksgrlvlpkkfaeeh..ggkkeesktltled.esgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvv 81 l+psdv+++gr+vlpkk ae++ + +e++t+++ed ++ +W +++++ ++ks++y+l+ ++ eF +++ LkegD + 39429 1 LKPSDVGNLGRIVLPKKEAESClpYLTVREGMTIVMEDlTTAYKWHMRYRFwpNNKSRMYLLE-NTGEFIRSHCLKEGDLLR 81 579*******************6666799***5556***99777777777777.*************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd10017	3.88E-21	1	83	No hit	No description
PROSITE profile	PS50863	10.447	1	83	IPR003340	B3 DNA binding domain
SMART	SM01019	0.0099	1	83	IPR003340	B3 DNA binding domain
Gene3D	G3DSA:2.40.330.10	1.8E-23	1	82	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	3.79E-20	1	82	IPR015300	DNA-binding pseudobarrel domain
Pfam	PF02362	7.3E-13	1	82	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 83 aa Download sequence Send to blast
LKPSDVGNLG RIVLPKKEAE SCLPYLTVRE GMTIVMEDLT TAYKWHMRYR FWPNNKSRMY 60 LLENTGEFIR SHCLKEGDLL RLY

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j9c_A	4e-30	1	83	17	99	B3 domain-containing transcription factor LEC2
6j9c_D	4e-30	1	83	17	99	B3 domain-containing transcription factor LEC2
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator specifically required for expression of the maturation program in the seed development. Probably potentiates the response to the seed-specific hormone abscisic acid (ABA). May bind to DNA indirectly.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002973460.2	8e-40	regulatory protein viviparous-1
Refseq	XP_002993595.1	8e-40	regulatory protein viviparous-1
Swissprot	P26307	2e-35	VIV1_MAIZE; Regulatory protein viviparous-1
TrEMBL	D8R649	4e-52	D8R649_SELML; Uncharacterized protein ABI3C-1
TrEMBL	D8SGB6	4e-52	D8SGB6_SELML; Uncharacterized protein ABI3C-2
STRING	EFJ16661	7e-53	(Selaginella moellendorffii)
STRING	EFJ32605	6e-53	(Selaginella moellendorffii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP788	17	66

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G24650.1	1e-37	B3 family protein

Link Out ? help Back to Top
Phytozome	39429
Entrez Gene	9652812

Publications ? help Back to Top
Williamson JD,Scandalios JG Differential response of maize catalases to abscisic acid: Vp1 transcriptional activator is not required for abscisic acid-regulated Cat1 expression. Proc. Natl. Acad. Sci. U.S.A., 1992. 89(18): p. 8842-6 [PMID:1388272] Banks JA, et al. The Selaginella genome identifies genetic changes associated with the evolution of vascular plants. Science, 2011. 332(6032): p. 960-3 [PMID:21551031] Hoecker U,Vasil IK,McCarty DR Integrated control of seed maturation and germination programs by activator and repressor functions of Viviparous-1 of maize. Genes Dev., 1995. 9(20): p. 2459-69 [PMID:7590227]