PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

39529

Organism

Selaginella moellendorffii

Taxonomic ID

88036

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella

Family

HB-other

Protein Properties

Length: 63aa MW: 7686.69 Da PI: 10.9769

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
39529	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	36.7	7.3e-12	11	58	10	54
HHHHHHHHHHH...HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 10 eqleeLeelFe...knrypsaeereeLAkklgLterqVkvWFqNrRak 54 e ++L + ++yp+ +e+ LA+++gL+ +q+ +WF N+R + 39529 11 EARQQLLDWWSqhqDHPYPNGDEKSNLAQSTGLEPKQINNWFINQRKR 58 4445554444422169******************************88 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	2.69E-18	1	62	IPR009057	Homeodomain-like
SMART	SM00389	4.2E-8	1	63	IPR001356	Homeobox domain
PROSITE profile	PS50071	13.621	1	62	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	2.5E-28	5	62	IPR009057	Homeodomain-like
CDD	cd00086	3.32E-10	11	62	No hit	No description
Pfam	PF05920	2.8E-18	19	58	IPR008422	Homeobox KN domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 63 aa Download sequence Send to blast
KKKRKKKIPK EARQQLLDWW SQHQDHPYPN GDEKSNLAQS TGLEPKQINN WFINQRKRHW 60 PQA

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	1	5	KKRKK

Functional Description ? help Back to Top
Source	Description
UniProt	Probably binds to the DNA sequence 5'-TGAC-3'.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024535927.1	5e-28	uncharacterized protein LOC112348098
Swissprot	P56667	1e-23	KNX10_MAIZE; Homeobox protein knotted-1-like 10 (Fragment)
TrEMBL	D8RVM3	8e-27	D8RVM3_SELML; KNOX transcription factor
TrEMBL	D8S2C7	4e-26	D8S2C7_SELML; KNOX transcription factor
STRING	EFJ21442	7e-27	(Selaginella moellendorffii)
STRING	EFJ23982	1e-27	(Selaginella moellendorffii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP167	17	148

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G62360.1	1e-20	KNOX/ELK homeobox transcription factor

Link Out ? help Back to Top
Phytozome	39529

Publications ? help Back to Top
Kerstetter R, et al. Sequence analysis and expression patterns divide the maize knotted1-like homeobox genes into two classes. Plant Cell, 1994. 6(12): p. 1877-87 [PMID:7866030]