PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

39830

Common Name

MICPUCDRAFT_39830

Organism

Micromonas pusilla CCMP1545

Taxonomic ID

564608

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Mamiellaceae; Micromonas; Micromonas pusilla

Family

C2H2

Protein Properties

Length: 557aa MW: 56088.1 Da PI: 6.3724

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
39830	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	11.7	0.0008	285	309	1	23
EEET..TTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirtH 23 ++C+ C++ + + s+L H r H 39830 285 FVCGigGCSRAYGSASSLCAHKRAH 309 89*********************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.160.60	3.0E-6	279	309	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profile	PS50157	9.598	285	315	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	287	310	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 557 aa Download sequence Send to blast
MKPPPVKTAA AAARGTPSVR AARHSISNAT PQQTTNESKR DIATPLTAPP AGMNVAANTP 60 AANETENAAA AAGGRNADVI RGAPAPSEHS SAAAHIASQA TPGTHLRDDV GGAANANDPV 120 DASPSATKTP GDAGSLDAAS PGAAMAADAL ASVVGAAESS DAYLGNVEGA TAEREQLYNR 180 FAAAATPNPG EETKGVDDVG VGSMSAAAAA AVDAARAAAV AAVVENFNKR KATAVVDAMI 240 PPHAAAVGAK KKAPAPGVAD LFSVLLPPAK KRKPRRFLSS DQKTFVCGIG GCSRAYGSAS 300 SLCAHKRAHH PNWKEERAKQ RELDAAAALA AGENAAGKKD EKIDDDDENE DKDGKNDDDV 360 EEEEDEDESC EADVAGRAAR KEGAAALDAA ARNTHSGAWV EALAADTHGR LGALRRSRQR 420 VQRGLRDARI ACEKKPKPGA NTAGVKAAAA SAEAIAAAAA ARLLQQMESA LEVESERLTG 480 WLAKLESIAA LRMGAAGKVC GFSETEAAAL SAEEKVAAAV AEQTARAIAA AASAAAWSVD 540 GRRARAARAS AAAGLP*

Sequence ? help Back to Top

Protein Sequence Length: 557 aa Download sequence Send to blast

MKPPPVKTAA AAARGTPSVR AARHSISNAT PQQTTNESKR DIATPLTAPP AGMNVAANTP  60
AANETENAAA AAGGRNADVI RGAPAPSEHS SAAAHIASQA TPGTHLRDDV GGAANANDPV  120
DASPSATKTP GDAGSLDAAS PGAAMAADAL ASVVGAAESS DAYLGNVEGA TAEREQLYNR  180
FAAAATPNPG EETKGVDDVG VGSMSAAAAA AVDAARAAAV AAVVENFNKR KATAVVDAMI  240
PPHAAAVGAK KKAPAPGVAD LFSVLLPPAK KRKPRRFLSS DQKTFVCGIG GCSRAYGSAS  300
SLCAHKRAHH PNWKEERAKQ RELDAAAALA AGENAAGKKD EKIDDDDENE DKDGKNDDDV  360
EEEEDEDESC EADVAGRAAR KEGAAALDAA ARNTHSGAWV EALAADTHGR LGALRRSRQR  420
VQRGLRDARI ACEKKPKPGA NTAGVKAAAA SAEAIAAAAA ARLLQQMESA LEVESERLTG  480
WLAKLESIAA LRMGAAGKVC GFSETEAAAL SAEEKVAAAV AEQTARAIAA AASAAAWSVD  540
GRRARAARAS AAAGLP*

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003058897.1	0.0	predicted protein
TrEMBL	C1MRL8	0.0	C1MRL8_MICPC; Predicted protein
STRING	XP_003058897.1	0.0	(Micromonas pusilla)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Chlorophytae	OGCP9305	2	2

Link Out ? help Back to Top
Phytozome	39830
Entrez Gene	9683970

Publications ? help Back to Top
Worden AZ, et al. Green evolution and dynamic adaptations revealed by genomes of the marine picoeukaryotes Micromonas. Science, 2009. 324(5924): p. 268-72 [PMID:19359590]