PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

402258

Common Name

SELMODRAFT_402258

Organism

Selaginella moellendorffii

Taxonomic ID

88036

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella

Family

NAC

Protein Properties

Length: 475aa MW: 53593.8 Da PI: 5.5446

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
402258	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	30.8	8.5e-10	316	409	12	110
NAM 12 eelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgy.WkatgkdkevlskkgelvglkktLvfyk 110 + +v+ L++k +++kl++ +i+e+d+y ++P L ++ + yfFs+++ y ++r+t +g Wk++g + +++ +ge+v k+ L f 402258 316 DSFLVDALRRKKARTKLDF--HIPEADVYAMHPALLLRN--SPAGTRYFFSRTKY-YFCRPARSRTTLEGWrWKQQGPSLPIKM-NGEVVAYKTYLSFVP 409 5555566777777777777..7************633..33346699988765.5556666666666655*******9.999********83 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	11.981	305	471	IPR003441	NAC domain
SuperFamily	SSF101941	8.63E-10	315	413	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 475 aa Download sequence Send to blast
MSPHLVGYSV HSENLRAQNL LLRLREQGRN PVRDVSHEEA MILDTADDSY SLQAVVDGAS 60 SSYNHSPPPL PPSGFIHLSP VVCVLEPCAA CSCACCCQCP WCWTEKAAPF QVQWVLEQQQ 120 CEELDCSELF LLSQCAAAAA AAMENFTDSS PPPIDAAAED ERAAFFYSFT DGCLASMDDA 180 IVADECWNSL LDPRVLLEDE KQQWGKVAAS TPPVNVRAQE TKFQCGDGNC QEHARQENAR 240 IREFRAAFKR ALRDNLVIDV DAATDVKCEV VDDDDDFTLP GLREYHPTMD PLQRSPEVAG 300 GVESRNKRVR KTQSDDSFLV DALRRKKART KLDFHIPEAD VYAMHPALLL RNSPAGTRYF 360 FSRTKYYFCR PARSRTTLEG WRWKQQGPSL PIKMNGEVVA YKTYLSFVPL KNNASWLEML 420 LEAAEGRRSR RWARYTMEEI VLKEDRAIEL QMLKACLIPR PFRVLCRISS RQDP*

Sequence ? help Back to Top

Protein Sequence Length: 475 aa Download sequence Send to blast

MSPHLVGYSV HSENLRAQNL LLRLREQGRN PVRDVSHEEA MILDTADDSY SLQAVVDGAS  60
SSYNHSPPPL PPSGFIHLSP VVCVLEPCAA CSCACCCQCP WCWTEKAAPF QVQWVLEQQQ  120
CEELDCSELF LLSQCAAAAA AAMENFTDSS PPPIDAAAED ERAAFFYSFT DGCLASMDDA  180
IVADECWNSL LDPRVLLEDE KQQWGKVAAS TPPVNVRAQE TKFQCGDGNC QEHARQENAR  240
IREFRAAFKR ALRDNLVIDV DAATDVKCEV VDDDDDFTLP GLREYHPTMD PLQRSPEVAG  300
GVESRNKRVR KTQSDDSFLV DALRRKKART KLDFHIPEAD VYAMHPALLL RNSPAGTRYF  360
FSRTKYYFCR PARSRTTLEG WRWKQQGPSL PIKMNGEVVA YKTYLSFVPL KNNASWLEML  420
LEAAEGRRSR RWARYTMEEI VLKEDRAIEL QMLKACLIPR PFRVLCRISS RQDP*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	D8QQ31	0.0	D8QQ31_SELML; Uncharacterized protein
STRING	EFJ37720	0.0	(Selaginella moellendorffii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP18839	2	2

Link Out ? help Back to Top
Phytozome	402258
Entrez Gene	9663161

Publications ? help Back to Top
Banks JA, et al. The Selaginella genome identifies genetic changes associated with the evolution of vascular plants. Science, 2011. 332(6032): p. 960-3 [PMID:21551031]