PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

402651

Common Name

SELMODRAFT_402651

Organism

Selaginella moellendorffii

Taxonomic ID

88036

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella

Family

bZIP

Protein Properties

Length: 284aa MW: 31120.6 Da PI: 6.3105

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
402651	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	30.3	8.9e-10	108	139	5	36
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvk 36 kr+rr + NR +A+rsR RK+++i+eLe+ ++ 402651 108 KRARRIIANRQSAQRSRIRKLQYIAELEKNME 139 9***************************9776 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	1.8E-7	101	153	No hit	No description
SMART	SM00338	4.3E-6	104	170	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	2.01E-8	108	152	No hit	No description
Pfam	PF00170	5.5E-8	108	139	IPR004827	Basic-leucine zipper domain
CDD	cd14703	1.30E-18	109	154	No hit	No description
PROSITE pattern	PS00036	0	111	126	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 284 aa Download sequence Send to blast
MNDYSNSSAT TSSVKHRRSV SDTAAFIDNA SPPPAIAQTD ERHEKEEQLV KNPQQLSDVL 60 LEGSMNKIDI SPKNSSPTIS DGQDGDCVVV ANQVLDDDIS LDPSLDPKRA RRIIANRQSA 120 QRSRIRKLQY IAELEKNMEV STLTPQVSFL DHQRVLLNVD NGVMKQRIAA LVQNVRLKDA 180 HNEALRKEAE SLRQLYQQQQ QQFEIQYHQF DGFIGSNPQD HGSGSSSNSG VLITHKNTSA 240 LLSGSGGATE KLDDACYSHT TMPDFGGATT RATCAPLSLS LKF*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024530064.1	0.0	basic leucine zipper 19
TrEMBL	D8QML6	0.0	D8QML6_SELML; Uncharacterized protein
STRING	EFJ38598	0.0	(Selaginella moellendorffii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP126	17	181

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G58120.1	1e-34	bZIP family protein

Link Out ? help Back to Top
Phytozome	402651
Entrez Gene	9641954

Publications ? help Back to Top
Banks JA, et al. The Selaginella genome identifies genetic changes associated with the evolution of vascular plants. Science, 2011. 332(6032): p. 960-3 [PMID:21551031]