PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 403080
Common NameSELMODRAFT_403080
Organism
Selaginella moellendorffii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella
Family MYB_related
Protein Properties Length: 549aa    MW: 62704 Da    PI: 5.0547
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
403080genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding36.31.3e-11492538346
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqk 46 
                      rWT+ E+e l ++v+ +G+g+Wk+I +       +Rt+ ++k++w++
           403080 492 RWTAREEEALRKGVEIFGKGRWKAILQSNLdvfDNRTEVDLKDKWRN 538
                      9**************************9999***************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129411.337485544IPR017930Myb domain
SuperFamilySSF466893.81E-14487540IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.8E-12487541IPR009057Homeodomain-like
SMARTSM007171.6E-8489542IPR001005SANT/Myb domain
CDDcd116604.55E-17491541No hitNo description
PfamPF002497.6E-9492538IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009901Biological Processanther dehiscence
GO:0010152Biological Processpollen maturation
GO:0043067Biological Processregulation of programmed cell death
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 549 aa     Download sequence    Send to blast
MGRGISLPVA YGRLIGEGQC STQEATQHSK QEEWIWEYVL KNCQDFSIAT RLLEAIPIPD  60
TPFIKKLAIL KLLSLDVEAG CYAERDLFAL QGLERLARDE TRKELEEEED EEENVGVVDR  120
EEGQQGGDEK TRRRWRRREM DSMWSKVGVL VKAELALQHL RDGKEDWEGF TDALDRHWGD  180
VVQDTEEPDF CQGNNIKCDL WSLKANHRLS KFILAENKRE TVDELVKRFL ALAWEDVGQV  240
LLEKVDEDIV NGRYVPGGEK RPRECEDNSD GGADPKKKRV RKTLLASLDG EEAEMSRPPW  300
SGESERPVTR RLRRRCYESE ALQTPAVDKA VNELKSSRYN LRKQVRDPLP EAVEVARSLR  360
EDTSTANGSL NQQGQPDQQQ QEAQPDEPPQ PSGSGNRQEE RAQLDANLTS KQQEQQAQAL  420
GNAAGKGKMS MMERNHTART REWNDDDDDI EEDTSPSASR RVNLPSSSTK APSPLQKIEP  480
KVSLLRRRKI KRWTAREEEA LRKGVEIFGK GRWKAILQSN LDVFDNRTEV DLKDKWRNIE  540
KAEGIKRD*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002961303.10.0uncharacterized protein LOC9633022
TrEMBLD8QNZ60.0D8QNZ6_SELML; Uncharacterized protein
STRINGEFJ388420.0(Selaginella moellendorffii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP15031424
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58340.24e-11MYB_related family protein
Publications ? help Back to Top
  1. Banks JA, et al.
    The Selaginella genome identifies genetic changes associated with the evolution of vascular plants.
    Science, 2011. 332(6032): p. 960-3
    [PMID:21551031]