PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

403458

Common Name

SELMODRAFT_403458

Organism

Selaginella moellendorffii

Taxonomic ID

88036

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella

Family

Dof

Protein Properties

Length: 202aa MW: 22795.3 Da PI: 9.9936

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
403458	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	28.5	3.3e-09	149	188	4	42
zf-Dof 4 kalkcprCds.tntkfCyynnyslsqPryfCkaCrryWtk 42 ++++cp C t+f +nny qPry Ck C+ Wtk 403458 149 EQIDCPWCGRiWCTRFYDFNNYKPGQPRYHCKPCKLTWTK 188 68899999762579*************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	0.002	148	193	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	9.0E-8	150	188	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 202 aa Download sequence Send to blast
MKRKAQDAEI PMLDDLEDEV QGDGWEYEGG LACPPWDPEA LESFCAMDDW CGEPVMARVK 60 PKEPANKPKI SSEPERPATL SKPKRKSSSE PKRPKTSSVP KRPKTPSEPK RPKASKSCGG 120 EAKTRKNASA KVTPELRALL AKVRATLPEQ IDCPWCGRIW CTRFYDFNNY KPGQPRYHCK 180 PCKLTWTKDK VPRPRSKRLA F*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	83	94	KRKSSSEPKRPK
2	90	96	PKRPKTS

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002961520.2	1e-128	peroxidase 29
TrEMBL	D8QRH1	1e-142	D8QRH1_SELML; Uncharacterized protein
STRING	EFJ36778	1e-143	(Selaginella moellendorffii)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G45610.1	2e-06	Dof family protein

Link Out ? help Back to Top
Phytozome	403458
Entrez Gene	9657261

Publications ? help Back to Top
Banks JA, et al. The Selaginella genome identifies genetic changes associated with the evolution of vascular plants. Science, 2011. 332(6032): p. 960-3 [PMID:21551031]