PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

403462

Common Name

SELMODRAFT_403462

Organism

Selaginella moellendorffii

Taxonomic ID

88036

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella

Family

Dof

Protein Properties

Length: 199aa MW: 22527.9 Da PI: 9.7811

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
403462	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	28.5	3.2e-09	146	185	4	42
zf-Dof 4 kalkcprCds.tntkfCyynnyslsqPryfCkaCrryWtk 42 ++++cp C t+f +nny qPry Ck C+ Wtk 403462 146 EQIDCPWCGRiWCTRFYDFNNYKPGQPRYHCKPCKLTWTK 185 68899999762579*************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	0.002	145	190	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	8.8E-8	147	185	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 199 aa Download sequence Send to blast
MKRKAQDAEI PMLDDLEDEV QGDGWEYEGG LACPPWDPEA LKSFCAMEDW CGEPVMARVK 60 PKEPANKPKI SSNPERPETL SKPKRKSSSE PKTPSEPKRP NISSEPKRPK TSKSCGGEAK 120 TRKNASAKVT PELRALLAKV RATLPEQIDC PWCGRIWCTR FYDFNNYKPG QPRYHCKPCK 180 LTWTKDKVPR PRSKRLAF*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	105	111	PKRPKTS

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002961520.2	1e-130	peroxidase 29
TrEMBL	D8QRH5	1e-141	D8QRH5_SELML; Uncharacterized protein
STRING	EFJ36781	1e-142	(Selaginella moellendorffii)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G45610.1	1e-06	Dof family protein

Link Out ? help Back to Top
Phytozome	403462
Entrez Gene	9657264

Publications ? help Back to Top
Banks JA, et al. The Selaginella genome identifies genetic changes associated with the evolution of vascular plants. Science, 2011. 332(6032): p. 960-3 [PMID:21551031]