PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information? help Back to Top

TF ID

40449

Common Name

MICPUCDRAFT_40449

Organism

Taxonomic ID

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Mamiellaceae; Micromonas; Micromonas pusilla

Family

Protein Properties

Length: 227aa MW: 24018.8 Da PI: 4.5766

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
40449	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	56.4	6.5e-18	98	178	19	99
NF-YC 19 helPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivprd 99 +lPlar+k+i+k d++vk + +a ++ska elf+ lt ++l + kr+t+k d++ v r +fl d+ ++ 40449 98 VTLPLARVKRIMKCDKEVKTAAVDAAKVVSKATELFLESLTEGAFLGMKAGKRKTVKYDDLEGFVMRKPRLEFLHDHDKEN 178 579*************************************************************************98766 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47095	9.95E-10	4	68	IPR009071	High mobility group box domain
SMART	SM00398	0.0019	5	80	IPR009071	High mobility group box domain
Pfam	PF09011	7.8E-10	5	72	IPR009071	High mobility group box domain
PROSITE profile	PS50118	10.14	6	64	IPR009071	High mobility group box domain
CDD	cd00084	7.27E-7	7	70	No hit	No description
Gene3D	G3DSA:1.10.30.10	2.0E-9	7	69	IPR009071	High mobility group box domain
Pfam	PF00808	1.9E-14	99	159	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
Gene3D	G3DSA:1.10.20.10	2.5E-20	100	173	IPR009072	Histone-fold
SuperFamily	SSF47113	1.68E-14	109	174	IPR009072	Histone-fold

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 227 aa Download sequence Send to blast
MAGGKQKGKI APYLVYANEV REDVKRALVD AGAVKPTMGE IAKAVGVRWK TLSDAQKATY 60 KEKADAINAE TAATRAADAE GGEAGEDGDD EDGEEEIVTL PLARVKRIMK CDKEVKTAAV 120 DAAKVVSKAT ELFLESLTEG AFLGMKAGKR KTVKYDDLEG FVMRKPRLEF LHDHDKENKE 180 DGDEDGGPPE APSGARQVTE FFTKKAATPA AATDAAAADG DDGDDA*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003059971.1	1e-159	predicted protein
TrEMBL	C1MWR7	1e-157	C1MWR7_MICPC; Predicted protein
STRING	XP_003059971.1	1e-158	(Micromonas pusilla)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Chlorophytae	OGCP4674	11	11

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G56170.2	4e-07	nuclear factor Y, subunit C2

Link Out ? help Back to Top
Phytozome	40449
Entrez Gene	9685142

Publications ? help Back to Top
Worden AZ, et al. Green evolution and dynamic adaptations revealed by genomes of the marine picoeukaryotes Micromonas. Science, 2009. 324(5924): p. 268-72 [PMID:19359590]