PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

404596

Common Name

SELMODRAFT_404596

Organism

Selaginella moellendorffii

Taxonomic ID

88036

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella

Family

bZIP

Protein Properties

Length: 780aa MW: 86172.9 Da PI: 10.1705

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
404596	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	21.7	4.3e-07	112	134	3	25
XXCHHHCHHHHHHHHHHHHHHHH CS bZIP_1 3 elkrerrkqkNReAArrsRqRKk 25 + k rr+++NReAAr+sR+RKk 404596 112 DTKTLRRLAQNREAARKSRLRKK 134 67899*****************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	6.6E-6	108	134	No hit	No description
PROSITE pattern	PS00036	0	117	132	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	6.6E-6	169	182	No hit	No description
Pfam	PF14144	1.5E-33	177	252	IPR025422	Transcription factor TGA like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 780 aa Download sequence Send to blast
MKLEIAEGIF PRLETTTTVR KRYQRPSNSP RSSKPTSASI TSVNSTEIYY SRQKAASDRN 60 LELDSNANTN WDNPCMADTS PLTDNSTDVE PSPKAGKSAI VSTVHDTNKN ADTKTLRRLA 120 QNREAARKSR LRKKGFYFGG SSSDQNGGNT NNTNAANSGA LAFDMDYARW MEEHQRQVSE 180 LRSGLQAHMA DNELRVLVDG FMSHYDELFR LKGVAAKADV FHLVSGMWKT PAERCFMWMG 240 GFRPSELLKI LIPQLEPLTE QQLLGICNLQ QSSQQAEDAL SQGMEALQQS LADTLAAGSL 300 GNSPNVANYM GQMAMAMGKL GTLENFVRQD SNHETSRSGA PCDGGLLREA ASSKFSMVGA 360 AQGVKYLDRK EKFFAGSINK EIAKVFTIFR FCTVEPAIRC SLRLWIHIHN FTSRTGAVSV 420 RKWPACKRTL SVHARHASKE YLLALGGGNG AVQFPRISKN AKNYALSSVL HGKVLSSLFL 480 FPYSMYRGSS SKVHERIVHS QDIKHPRLFF RNVYEARDVL CAMKMISKQT SIGRHKVNVK 540 SYRGWHPDGT MASLATIWML QQAIDENKSH GVLHLDKTAT MKICLLLGEE VICLMATSKC 600 GWEEGGGLRS QRTAALLDLV SSLLSLEPSA VGTEVETLKS RGKIVSTVHD TNRNADSMTL 660 RKLAKPRLVN DQNGGNNNNT NAGNWCLAFD MRDGWKNTKG KLASSEPACK HTFTLRRTFD 720 STARAQQLLG TCSRHSRPSQ GWTLSRKGWK LDTLVAGLSR KLPQRSELHE TNGHGDGKA*

Sequence ? help Back to Top

Protein Sequence Length: 780 aa Download sequence Send to blast

MKLEIAEGIF PRLETTTTVR KRYQRPSNSP RSSKPTSASI TSVNSTEIYY SRQKAASDRN  60
LELDSNANTN WDNPCMADTS PLTDNSTDVE PSPKAGKSAI VSTVHDTNKN ADTKTLRRLA  120
QNREAARKSR LRKKGFYFGG SSSDQNGGNT NNTNAANSGA LAFDMDYARW MEEHQRQVSE  180
LRSGLQAHMA DNELRVLVDG FMSHYDELFR LKGVAAKADV FHLVSGMWKT PAERCFMWMG  240
GFRPSELLKI LIPQLEPLTE QQLLGICNLQ QSSQQAEDAL SQGMEALQQS LADTLAAGSL  300
GNSPNVANYM GQMAMAMGKL GTLENFVRQD SNHETSRSGA PCDGGLLREA ASSKFSMVGA  360
AQGVKYLDRK EKFFAGSINK EIAKVFTIFR FCTVEPAIRC SLRLWIHIHN FTSRTGAVSV  420
RKWPACKRTL SVHARHASKE YLLALGGGNG AVQFPRISKN AKNYALSSVL HGKVLSSLFL  480
FPYSMYRGSS SKVHERIVHS QDIKHPRLFF RNVYEARDVL CAMKMISKQT SIGRHKVNVK  540
SYRGWHPDGT MASLATIWML QQAIDENKSH GVLHLDKTAT MKICLLLGEE VICLMATSKC  600
GWEEGGGLRS QRTAALLDLV SSLLSLEPSA VGTEVETLKS RGKIVSTVHD TNRNADSMTL  660
RKLAKPRLVN DQNGGNNNNT NAGNWCLAFD MRDGWKNTKG KLASSEPACK HTFTLRRTFD  720
STARAQQLLG TCSRHSRPSQ GWTLSRKGWK LDTLVAGLSR KLPQRSELHE TNGHGDGKA*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	D8QVU3	0.0	D8QVU3_SELML; Uncharacterized protein
STRING	EFJ36117	0.0	(Selaginella moellendorffii)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68640.1	2e-82	bZIP family protein

Link Out ? help Back to Top
Phytozome	404596
Entrez Gene	9643266

Publications ? help Back to Top
Banks JA, et al. The Selaginella genome identifies genetic changes associated with the evolution of vascular plants. Science, 2011. 332(6032): p. 960-3 [PMID:21551031]