PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

405132

Common Name

SELMODRAFT_405132

Organism

Selaginella moellendorffii

Taxonomic ID

88036

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella

Family

C2H2

Protein Properties

Length: 182aa MW: 20817.6 Da PI: 4.1348

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
405132	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	21.9	4.4e-07	146	168	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C++C ++F+ + +Lk+H+ +H 405132 146 YPCSICERVFKYSWHLKNHQLVH 168 99******************998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	1.26E-6	139	171	No hit	No description
SMART	SM00355	0.0059	146	168	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	11.635	146	173	IPR007087	Zinc finger, C2H2
Gene3D	G3DSA:3.30.160.60	7.1E-7	146	171	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE pattern	PS00028	0	148	168	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 182 aa Download sequence Send to blast
MARRKKRKRA NASDRPEVAP SIDALNARDD QQSKQMVVYA DTSGFLGRQE EEAKEGQEVK 60 EEEEVLMLEL NPVSDPVEED DDDDEEVLML ELNPVSDPVE EDDDDDDDDK EEEEDDEEEQ 120 LPGSSKRSPS RSKALKRTRT YKTGIYPCSI CERVFKYSWH LKNHQLVHSD EVTCHFASDL 180 V*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	2	8	RRKKRKR
2	3	8	RKKRKR

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002963334.2	1e-120	glutamic acid-rich protein
TrEMBL	D8QYI2	1e-128	D8QYI2_SELML; Uncharacterized protein
STRING	EFJ35205	1e-129	(Selaginella moellendorffii)

Link Out ? help Back to Top
Phytozome	405132
Entrez Gene	9643544

Publications ? help Back to Top
Banks JA, et al. The Selaginella genome identifies genetic changes associated with the evolution of vascular plants. Science, 2011. 332(6032): p. 960-3 [PMID:21551031]