PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

405582

Common Name

SELMODRAFT_405582

Organism

Selaginella moellendorffii

Taxonomic ID

88036

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella

Family

HB-other

Protein Properties

Length: 547aa MW: 61346.9 Da PI: 5.895

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
405582	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	21	5.5e-07	54	76	34	56
HHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 34 AkklgLterqVkvWFqNrRakek 56 A +l +t +qV +WFqNrR +k 405582 54 AGQLPITGKQVLNWFQNRRHSQK 76 56789**************9988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	3.8E-5	13	85	IPR009057	Homeodomain-like
PROSITE profile	PS50071	8.649	14	78	IPR001356	Homeobox domain
CDD	cd00086	8.97E-4	14	79	No hit	No description
SuperFamily	SSF46689	2.44E-6	15	81	IPR009057	Homeodomain-like
Pfam	PF00046	1.8E-4	54	76	IPR001356	Homeobox domain
Pfam	PF16719	1.5E-36	121	238	IPR032001	SAWADEE domain
CDD	cd04508	0.00715	126	163	No hit	No description
SuperFamily	SSF48371	1.96E-7	272	326	IPR016024	Armadillo-type fold
Gene3D	G3DSA:1.25.10.10	3.2E-6	359	488	IPR011989	Armadillo-like helical
SuperFamily	SSF48371	1.96E-7	382	495	IPR016024	Armadillo-type fold
Pfam	PF08045	3.4E-10	388	495	IPR012535	Cell division protein Cdc14

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0003682	Molecular Function	chromatin binding

Sequence ? help Back to Top
Protein Sequence Length: 547 aa Download sequence Send to blast
MGRPPQAAGV PVFRFLPQEV AQMERALEAN NNIALPRPEC DDLAEAFTNT PERAGQLPIT 60 GKQVLNWFQN RRHSQKAKKI LQMQQQQQHQ DSGRGFTPSP LANAASPMQY MYAPPPEVEK 120 EMDFEAKSSR DGAWYDVSLF LAHRIEASEH EVRVRFVGFG SEEDEWVDVK TSVRQRSMPC 180 DVVECMVVLP GDLILCFQEG NEQALYYDAT VLDIQRRRHD LRGCRCRFWV RYDHDQSETA 240 RDGFTNPQEQ TALKKRWAEE FAAASASTSS PQQSACNVVA ELVESLVAQR QRREVALRLR 300 EALRDVKANF SFARVKGLRR LLAFLMLAAA SERGVELFRE SQSYQELQVI PALFKHTLAP 360 QKSPASAPPV FNSSEEAAEV SNPPTPAEIV LALRVLEGCC LVDNSSKAAA AHHMAVKELL 420 DLLSATGIPE RTACLDALLA LLLDSPANQK EFEYYRGVSK ICDSLKNRHV DVALRTKCAE 480 FLLLLVGDIL PKTEALQDQL KEWMGTECCV ILWDVYSNLE PAFADPERKK RSLKSLAEKM 540 LSLVDS*

Sequence ? help Back to Top

Protein Sequence Length: 547 aa Download sequence Send to blast

MGRPPQAAGV PVFRFLPQEV AQMERALEAN NNIALPRPEC DDLAEAFTNT PERAGQLPIT  60
GKQVLNWFQN RRHSQKAKKI LQMQQQQQHQ DSGRGFTPSP LANAASPMQY MYAPPPEVEK  120
EMDFEAKSSR DGAWYDVSLF LAHRIEASEH EVRVRFVGFG SEEDEWVDVK TSVRQRSMPC  180
DVVECMVVLP GDLILCFQEG NEQALYYDAT VLDIQRRRHD LRGCRCRFWV RYDHDQSETA  240
RDGFTNPQEQ TALKKRWAEE FAAASASTSS PQQSACNVVA ELVESLVAQR QRREVALRLR  300
EALRDVKANF SFARVKGLRR LLAFLMLAAA SERGVELFRE SQSYQELQVI PALFKHTLAP  360
QKSPASAPPV FNSSEEAAEV SNPPTPAEIV LALRVLEGCC LVDNSSKAAA AHHMAVKELL  420
DLLSATGIPE RTACLDALLA LLLDSPANQK EFEYYRGVSK ICDSLKNRHV DVALRTKCAE  480
FLLLLVGDIL PKTEALQDQL KEWMGTECCV ILWDVYSNLE PAFADPERKK RSLKSLAEKM  540
LSLVDS*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4iuq_A	2e-35	121	240	3	123	SAWADEE HOMEODOMAIN HOMOLOG 1
4iuq_B	2e-35	121	240	3	123	SAWADEE HOMEODOMAIN HOMOLOG 1
4iur_A	2e-35	121	240	3	123	SHH1 SAWADEE
4iur_B	2e-35	121	240	3	123	SHH1 SAWADEE
4iut_A	2e-35	121	240	3	123	SAWADEE HOMEODOMAIN HOMOLOG 1
4iut_B	2e-35	121	240	3	123	SAWADEE HOMEODOMAIN HOMOLOG 1
4iuu_A	2e-35	121	240	3	123	SAWADEE HOMEODOMAIN HOMOLOG 1
4iuu_B	2e-35	121	240	3	123	SAWADEE HOMEODOMAIN HOMOLOG 1
4iuv_A	2e-35	121	240	3	123	SAWADEE HOMEODOMAIN HOMOLOG 1
4iuv_B	2e-35	121	240	3	123	SAWADEE HOMEODOMAIN HOMOLOG 1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024525114.1	0.0	uncharacterized protein LOC112344476
TrEMBL	D8QZ18	0.0	D8QZ18_SELML; Uncharacterized protein
STRING	EFJ34712	0.0	(Selaginella moellendorffii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP1641	14	19

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G18380.3	3e-59	sequence-specific DNA binding transcription factors;sequence-specific DNA binding

Link Out ? help Back to Top
Phytozome	405582
Entrez Gene	9654388

Publications ? help Back to Top
Banks JA, et al. The Selaginella genome identifies genetic changes associated with the evolution of vascular plants. Science, 2011. 332(6032): p. 960-3 [PMID:21551031]