PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

405785

Common Name

SELMODRAFT_405785, ZFP1a-1

Organism

Selaginella moellendorffii

Taxonomic ID

88036

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella

Family

C2H2

Protein Properties

Length: 475aa MW: 50574.6 Da PI: 6.0809

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
405785	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	15.3	5.9e-05	240	262	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C++ F+++ L H++ H 405785 240 FSCTYCDRKFPSSQALGGHQNAH 262 89******************988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.160.60	4.9E-4	232	266	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	5.06E-6	236	267	No hit	No description
Pfam	PF13912	5.3E-6	240	264	IPR007087	Zinc finger, C2H2
PROSITE profile	PS50157	11.572	240	267	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	242	262	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 475 aa Download sequence Send to blast
MGSKRSFEDQ HREEEEEQEQ EEQEDQGRVP GVGGEGTARY PKRLNLNSRL EEEEEGQALE 60 LDRGDDLDQA RIVAAGCQDP KLDHRGRHHE LENEEMEEEE EEEEDSSAIV TREFEVCGEE 120 IITSSSTSPA AAAAVAHCFL GGATTKLGFL SRDLDHHHLS KQDHVAKARE HWRSSLSSST 180 SVVSEGSTSL GSSSDHQSPA AAVAAATAAI APLAPVALHA ASTAAENHAS IATTTTNRQF 240 SCTYCDRKFP SSQALGGHQN AHKRERTAAR RAHGARTAAA TTTTTTTAIT PTIGFPGGSS 300 GSAFHGFNAA AAANNRSLGV EAQSTVATAP SSLHKNSTLP SSSHPNSGEH HHSSSFSGFG 360 FHHPSLSGLD SKGWCAAARA ASSFLAGSSS QQQHQLQRSP SVEMFGHGVK SGVRFHINGL 420 VGGAPAAEEQ QHYQHQQQQQ QQHQCNLSSL KNSDPFEDDS GELDLSLRLG AKRH*

Sequence ? help Back to Top

Protein Sequence Length: 475 aa Download sequence Send to blast

MGSKRSFEDQ HREEEEEQEQ EEQEDQGRVP GVGGEGTARY PKRLNLNSRL EEEEEGQALE  60
LDRGDDLDQA RIVAAGCQDP KLDHRGRHHE LENEEMEEEE EEEEDSSAIV TREFEVCGEE  120
IITSSSTSPA AAAAVAHCFL GGATTKLGFL SRDLDHHHLS KQDHVAKARE HWRSSLSSST  180
SVVSEGSTSL GSSSDHQSPA AAVAAATAAI APLAPVALHA ASTAAENHAS IATTTTNRQF  240
SCTYCDRKFP SSQALGGHQN AHKRERTAAR RAHGARTAAA TTTTTTTAIT PTIGFPGGSS  300
GSAFHGFNAA AAANNRSLGV EAQSTVATAP SSLHKNSTLP SSSHPNSGEH HHSSSFSGFG  360
FHHPSLSGLD SKGWCAAARA ASSFLAGSSS QQQHQLQRSP SVEMFGHGVK SGVRFHINGL  420
VGGAPAAEEQ QHYQHQQQQQ QQHQCNLSSL KNSDPFEDDS GELDLSLRLG AKRH*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002964505.1	0.0	homeobox protein prospero
TrEMBL	D8QZP7	0.0	D8QZP7_SELML; EPF-type Cis2-His2 zinc finger transcription factor
STRING	EFJ34838	0.0	(Selaginella moellendorffii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP82	15	137

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G06650.1	1e-10	C2H2 family protein

Link Out ? help Back to Top
Phytozome	405785
Entrez Gene	9655699

Publications ? help Back to Top
Banks JA, et al. The Selaginella genome identifies genetic changes associated with the evolution of vascular plants. Science, 2011. 332(6032): p. 960-3 [PMID:21551031]