PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 407131
Common NameSELMODRAFT_407131, WOX3-2
Organism
Selaginella moellendorffii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella
Family WOX
Protein Properties Length: 249aa    MW: 27949.3 Da    PI: 8.239
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
407131genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox47.14.1e-1559114357
               --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC.TS-HHHHHHHHHHHHHHHHC CS
  Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkkl.gLterqVkvWFqNrRakekk 57 
               +R+ ++++ql++Lee+++k   ps e ++ +A+ + +++ ++V++WF N++ +ek+
    407131  59 QRWEPNSYQLQILEEFYAKATPPSPENIANIAELVgQVDHSKVYYWFSNKKSREKR 114
               7**********************************99******************7 PP
2Wus_type_Homeobox53.84.6e-1858116365
  Wus_type_Homeobox   3 rtRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 
                        ++RW P++ Q++iLee y +++  P+ e+i +i++     G+++   V+yWF N+k+Re++k+
             407131  58 QQRWEPNSYQLQILEEFYAKAT-PPSPENIANIAEL---VGQVDHSKVYYWFSNKKSREKRKR 116
                        79****************9875.699999**99865...5*********************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003890.008451119IPR001356Homeobox domain
PROSITE profilePS5007110.7754115IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.603.2E-1058118IPR009057Homeodomain-like
SuperFamilySSF466897.27E-1158118IPR009057Homeodomain-like
PfamPF000465.1E-1359114IPR001356Homeobox domain
CDDcd000867.53E-460107No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 249 aa     Download sequence    Send to blast
MPRSKQQASR ASSVSDQIDQ ERREMRLEIK ALHVHHRSQR NNINISSEPA PPRPVGVQQR  60
WEPNSYQLQI LEEFYAKATP PSPENIANIA ELVGQVDHSK VYYWFSNKKS REKRKRRRLE  120
EAGASASSSP AFSAIATTAA ASSGSEQSHH QSYADQIVND GSFLPDACLF ETNVTLEQPR  180
IVIRLWPWSS SSIVALAVDL DIDNMQQASK AAIIFATDDL HVFACTVGKW KLDDYRNVLL  240
SSTFWPKI*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1111118EKRKRRRL
2112117KRKRRR
3113117RKRRR
4114118KRRRL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLD8R4040.0D8R404_SELML; Uncharacterized protein WOX3-2
STRINGEFJ330270.0(Selaginella moellendorffii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18010.12e-08WUSCHEL related homeobox 1
Publications ? help Back to Top
  1. Banks JA, et al.
    The Selaginella genome identifies genetic changes associated with the evolution of vascular plants.
    Science, 2011. 332(6032): p. 960-3
    [PMID:21551031]