PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

407891

Common Name

SELMODRAFT_407891

Organism

Selaginella moellendorffii

Taxonomic ID

88036

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella

Family

HB-other

Protein Properties

Length: 237aa MW: 27114.8 Da PI: 8.3205

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
407891	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	36.7	7.1e-12	196	230	20	54
HHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 20 eknrypsaeereeLAkklgLterqVkvWFqNrRak 54 ++n+yps+e++++ A+ lg+t++qV ++F N Ra+ 407891 196 RQNPYPSKEQKQKFAQDLGITKKQVENFFSNSRAR 230 25********************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50071	11.191	171	234	IPR001356	Homeobox domain
SMART	SM00389	3.7E-4	173	236	IPR001356	Homeobox domain
CDD	cd00086	7.04E-9	176	236	No hit	No description
SuperFamily	SSF46689	2.14E-13	176	235	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	9.7E-22	177	234	IPR009057	Homeodomain-like
Pfam	PF05920	2.7E-12	191	230	IPR008422	Homeobox KN domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 237 aa Download sequence Send to blast
MGMSFLADQV HPLNYACMLM VTVWLSCSRI DRFAMLDQEA EITKFQWRWW QWKLRKYADS 60 NILSAYSTPV PTRNFPKNAR GATAIAVGMH GHCQHPNGGT LPITGQFEDD DLQEFLMKLD 120 EDKSASEKGT RGNLPKEHDL QEFVMELDED NSAGEEIPCQ ESPATTLKRR RELSGTRGNL 180 PKQAVEVMLS WLYANRQNPY PSKEQKQKFA QDLGITKKQV ENFFSNSRAR VLKRNK*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	D8R539	1e-179	D8R539_SELML; Uncharacterized protein
STRING	EFJ32421	1e-180	(Selaginella moellendorffii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP133	16	172

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G23760.3	8e-09	BEL1-like homeodomain 4

Link Out ? help Back to Top
Phytozome	407891
Entrez Gene	9652602

Publications ? help Back to Top
Banks JA, et al. The Selaginella genome identifies genetic changes associated with the evolution of vascular plants. Science, 2011. 332(6032): p. 960-3 [PMID:21551031]