PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

408072

Common Name

SELMODRAFT_408072

Organism

Selaginella moellendorffii

Taxonomic ID

88036

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella

Family

G2-like

Protein Properties

Length: 112aa MW: 12501 Da PI: 6.2327

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
408072	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	35.9	1.6e-11	67	101	15	50
G2-like 15 veaveqLGGsekAtPktilelmkvkgLtlehvkSHL 50 +ave+L G ekA+P++ile+m+v++Lt+++v+S L 408072 67 TKAVEEL-GLEKAIPSRILEIMGVESLTRHNVASRL 101 68***.************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	7.5E-10	63	101	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	2.9E-10	68	101	IPR006447	Myb domain, plants

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 112 aa Download sequence Send to blast
MKSYAGESVN GQLTSSNDEV TLDDELESMQ RSASDHTGTV DAAQQEQHMQ RVENCHKKER 60 NLTTKKTKAV EELGLEKAIP SRILEIMGVE SLTRHNVASR LRVQEHHCML V*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	D8R739	2e-75	D8R739_SELML; Uncharacterized protein
STRING	EFJ31819	3e-76	(Selaginella moellendorffii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP2840	15	29

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G44190.1	1e-12	GOLDEN2-like 2

Link Out ? help Back to Top
Phytozome	408072
Entrez Gene	9634718

Publications ? help Back to Top
Banks JA, et al. The Selaginella genome identifies genetic changes associated with the evolution of vascular plants. Science, 2011. 332(6032): p. 960-3 [PMID:21551031]