PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

408664

Common Name

SELMODRAFT_408664

Organism

Selaginella moellendorffii

Taxonomic ID

88036

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella

Family

C3H

Protein Properties

Length: 1779aa MW: 198054 Da PI: 7.5051

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
408664	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	22.6	1.9e-07	127	147	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C+ f+++G+C+ G+rCkF+H+ 408664 127 PCK-FFQSGYCRNGSRCKFSHS 147 799.6677*************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.10.20.240	2.7E-11	25	99	No hit	No description
SuperFamily	SSF54277	5.89E-10	25	97	No hit	No description
SMART	SM00666	4.0E-9	27	110	IPR000270	PB1 domain
Pfam	PF00564	4.6E-7	28	108	IPR000270	PB1 domain
CDD	cd05992	3.33E-6	28	93	No hit	No description
SMART	SM00356	2.4E-5	122	148	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	15.976	122	149	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	1.07E-5	125	147	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	2.7E-5	127	147	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	9.4E-6	127	148	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF52540	3.76E-55	554	670	IPR027417	P-loop containing nucleoside triphosphate hydrolase
Gene3D	G3DSA:3.40.50.300	7.7E-49	555	689	IPR027417	P-loop containing nucleoside triphosphate hydrolase
Pfam	PF13086	6.4E-25	562	971	No hit	No description
CDD	cd00009	5.20E-5	565	714	No hit	No description
SuperFamily	SSF52540	3.76E-55	873	1211	IPR027417	P-loop containing nucleoside triphosphate hydrolase
Gene3D	G3DSA:3.40.50.300	7.7E-49	930	1025	IPR027417	P-loop containing nucleoside triphosphate hydrolase
Pfam	PF13087	2.0E-38	982	1192	No hit	No description
Gene3D	G3DSA:3.40.50.300	1.2E-5	1048	1203	IPR027417	P-loop containing nucleoside triphosphate hydrolase
SMART	SM00438	1.9	1257	1277	IPR000967	Zinc finger, NF-X1-type
CDD	cd06008	1.11E-6	1275	1326	No hit	No description
SMART	SM00438	6.9	1286	1307	IPR000967	Zinc finger, NF-X1-type
CDD	cd06008	4.22E-6	1333	1376	No hit	No description
SuperFamily	SSF48452	9.49E-8	1555	1614	IPR011990	Tetratricopeptide-like helical domain
Gene3D	G3DSA:1.25.40.10	1.2E-7	1556	1616	IPR011990	Tetratricopeptide-like helical domain
SuperFamily	SSF48452	9.49E-8	1650	1701	IPR011990	Tetratricopeptide-like helical domain
Gene3D	G3DSA:1.25.40.10	1.2E-7	1652	1697	IPR011990	Tetratricopeptide-like helical domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0005515	Molecular Function	protein binding
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 1779 aa Download sequence Send to blast
MASEGRGSDR HAAAALQETM EEPCSRAFRL KLCHNESIRL VMVTLQLSMQ ALVEAIKKTF 60 SELKSASGIV ISYGDSEGET ITVETDEDLN LALGDMSASQ AVPRFSVREK AMATGLAPAK 120 PSSQAGPCKF FQSGYCRNGS RCKFSHSSNN SSTGSTSIVR PVLLSAWSIE RWLENLIGRS 180 PADNIEELSS PPGLEMLCKV ASSLQLTRKA ADMLAKLLTR DEMRSSMLRH ETNKIYGSLA 240 DSRYAMQLQA HMTNQMPRTD EGLKPYLLLI EELQLRTSDG WKYLPLDAAE KLIAELPETP 300 LRDELGERLG GPVFRKIPII PSKDELLSVI PTAVPVNKVG LRYTSVLEYL ETHFRLLRED 360 FINPLRQGIK QYINRQGGYF AEVRIYSNVE LKGVRFTLNG IENKVSFVAE KVRNKTREIN 420 WEQSKRLMFG SLLCMSRDNF QTITWATVAG RKELAQNMVD LRLLDGSDLD ASFKYVMVES 480 AAAYFEAYSH VLKSLQREDM ENIPFKSHLI SLVKHVKEPA YLPQRAEGDR YDFSSAFPGG 540 TKEFGQFKFH ILQDWPEWNS TLDSSQVAAL KHALTKNLAL IQGPPGTGKT FVGMLIVKLL 600 LANLKREATK TRHFSTAEDV PDLCGPVLIV CYTNHALDQF LEGIFRSEKN VIRIGGRSKN 660 KQLDGRNLQN LLQLARENRD VQGAYVRKAV AARDDRRRLE AEIRRCVDEL NLPYVTETLL 720 HGVATEDQIT NLFYLGRTSA LAGKKVVEAW LEAENLRYVD VPARRVEQVA NRYAVLDDEV 780 EAADLHDQTV NVPREEGRRT QGLAAPGDGG WVHVQTRRRN RPVEAVEQQQ DPVVNNAHRD 840 EVPLELLVDY PDVWSLPLRE RKRLHEYWLD EIHANAQKEL TRFKQEYEAA CIECKAADSE 900 IQLSLLRRAK VIGMTTTAAA RLHDILVALK PEIVVVEEAA EVLESHILAC ISPYTKHLIL 960 IGDHLQLRPS VATFRLAQRH KLDVSMFERL VQSGVEHTML KTQRRMKPCI AKLISSIYPQ 1020 LRNHPSVLEY EDVKGVKSSL FFLDHNAPEE AGHEAGSKVN LAEAKLVVEL CSYLLKQEAY 1080 APGDMTILTM YKGQVQEISR RLKDRFQCRR VTGRPLGPEA ENSEATDSWM PRVSSVDDFQ 1140 GEENDIILLS LVRSNLVPGK EDEGTIGFLK TGNRVCVALS RARKGLYIFG NAQLLALKSP 1200 LWKGILHGLH QDGLMGSKLV LCCQNHPGVE TSVQHAEDFL QVGDGGCSRP CEYQLECGHA 1260 CPRRCHPESH DTFICPKMCL KPYDGCTHRC VKSCHGREDP ACPPCKEPVL KTFPTCGHEQ 1320 SVPCSTDPAK LTCRSPCKKL LSCGHACPEP CGLPCAKLCR QVVRKELPCG HATKMMCPQD 1380 PWTFSCLEPC RDILPDCEHR CGGTCDAPPS VEHHASSASS LVPGTAGTSA ARFSAARSAR 1440 DHAVTGHARS GSSAVIPASA CVESLAQLTL EESESSDRFV ELLDCGHIFE VTGLDQWMDM 1500 DDSAETCSKA IVLKFCPACK TPVRKSFRYA NVVKKKLHQI ELVKMKVYGH EQTRAGMGML 1560 SRKEYRQAFQ IFTEVIKNQP GNFEAHLGMA QALRGLKEFG YAVTHLRFIA ERSSLAADIR 1620 SLPVPRLKRP YTPVPSSLNL SFVAVPSRSL TIQALIQWGS ALTSLTEFSD AVRLCEIVLK 1680 HDSTNGSGKR LKEMAEKRLT HQVVEAVSAE FSARGHWYQC PNGHVYVVGE CGGPMQTSHC 1740 PDCGSIIGGE HHQSAAGNTH STIDGSDHAL YSDHTEPY*

Sequence ? help Back to Top

Protein Sequence Length: 1779 aa Download sequence Send to blast

MASEGRGSDR HAAAALQETM EEPCSRAFRL KLCHNESIRL VMVTLQLSMQ ALVEAIKKTF  60
SELKSASGIV ISYGDSEGET ITVETDEDLN LALGDMSASQ AVPRFSVREK AMATGLAPAK  120
PSSQAGPCKF FQSGYCRNGS RCKFSHSSNN SSTGSTSIVR PVLLSAWSIE RWLENLIGRS  180
PADNIEELSS PPGLEMLCKV ASSLQLTRKA ADMLAKLLTR DEMRSSMLRH ETNKIYGSLA  240
DSRYAMQLQA HMTNQMPRTD EGLKPYLLLI EELQLRTSDG WKYLPLDAAE KLIAELPETP  300
LRDELGERLG GPVFRKIPII PSKDELLSVI PTAVPVNKVG LRYTSVLEYL ETHFRLLRED  360
FINPLRQGIK QYINRQGGYF AEVRIYSNVE LKGVRFTLNG IENKVSFVAE KVRNKTREIN  420
WEQSKRLMFG SLLCMSRDNF QTITWATVAG RKELAQNMVD LRLLDGSDLD ASFKYVMVES  480
AAAYFEAYSH VLKSLQREDM ENIPFKSHLI SLVKHVKEPA YLPQRAEGDR YDFSSAFPGG  540
TKEFGQFKFH ILQDWPEWNS TLDSSQVAAL KHALTKNLAL IQGPPGTGKT FVGMLIVKLL  600
LANLKREATK TRHFSTAEDV PDLCGPVLIV CYTNHALDQF LEGIFRSEKN VIRIGGRSKN  660
KQLDGRNLQN LLQLARENRD VQGAYVRKAV AARDDRRRLE AEIRRCVDEL NLPYVTETLL  720
HGVATEDQIT NLFYLGRTSA LAGKKVVEAW LEAENLRYVD VPARRVEQVA NRYAVLDDEV  780
EAADLHDQTV NVPREEGRRT QGLAAPGDGG WVHVQTRRRN RPVEAVEQQQ DPVVNNAHRD  840
EVPLELLVDY PDVWSLPLRE RKRLHEYWLD EIHANAQKEL TRFKQEYEAA CIECKAADSE  900
IQLSLLRRAK VIGMTTTAAA RLHDILVALK PEIVVVEEAA EVLESHILAC ISPYTKHLIL  960
IGDHLQLRPS VATFRLAQRH KLDVSMFERL VQSGVEHTML KTQRRMKPCI AKLISSIYPQ  1020
LRNHPSVLEY EDVKGVKSSL FFLDHNAPEE AGHEAGSKVN LAEAKLVVEL CSYLLKQEAY  1080
APGDMTILTM YKGQVQEISR RLKDRFQCRR VTGRPLGPEA ENSEATDSWM PRVSSVDDFQ  1140
GEENDIILLS LVRSNLVPGK EDEGTIGFLK TGNRVCVALS RARKGLYIFG NAQLLALKSP  1200
LWKGILHGLH QDGLMGSKLV LCCQNHPGVE TSVQHAEDFL QVGDGGCSRP CEYQLECGHA  1260
CPRRCHPESH DTFICPKMCL KPYDGCTHRC VKSCHGREDP ACPPCKEPVL KTFPTCGHEQ  1320
SVPCSTDPAK LTCRSPCKKL LSCGHACPEP CGLPCAKLCR QVVRKELPCG HATKMMCPQD  1380
PWTFSCLEPC RDILPDCEHR CGGTCDAPPS VEHHASSASS LVPGTAGTSA ARFSAARSAR  1440
DHAVTGHARS GSSAVIPASA CVESLAQLTL EESESSDRFV ELLDCGHIFE VTGLDQWMDM  1500
DDSAETCSKA IVLKFCPACK TPVRKSFRYA NVVKKKLHQI ELVKMKVYGH EQTRAGMGML  1560
SRKEYRQAFQ IFTEVIKNQP GNFEAHLGMA QALRGLKEFG YAVTHLRFIA ERSSLAADIR  1620
SLPVPRLKRP YTPVPSSLNL SFVAVPSRSL TIQALIQWGS ALTSLTEFSD AVRLCEIVLK  1680
HDSTNGSGKR LKEMAEKRLT HQVVEAVSAE FSARGHWYQC PNGHVYVVGE CGGPMQTSHC  1740
PDCGSIIGGE HHQSAAGNTH STIDGSDHAL YSDHTEPY*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5mqf_U	2e-25	905	1195	1028	1310	Intron-binding protein aquarius
5xjc_Q	2e-25	905	1195	1028	1310	Intron-binding protein aquarius
5yzg_Q	2e-25	905	1195	1028	1310	Intron-binding protein aquarius
5z56_Q	2e-25	905	1195	1028	1310	Intron-binding protein aquarius
5z57_Q	2e-25	905	1195	1028	1310	Intron-binding protein aquarius
6ff7_U	2e-25	905	1195	1028	1310	Intron-binding protein aquarius
6icz_Q	2e-25	905	1195	1028	1310	RNA helicase aquarius
6id0_Q	2e-25	905	1195	1028	1310	RNA helicase aquarius
6id1_Q	2e-25	905	1195	1028	1310	RNA helicase aquarius
6qdv_U	2e-25	905	1195	1028	1310	Intron-binding protein aquarius
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024542551.1	0.0	NFX1-type zinc finger-containing protein 1
TrEMBL	D8R9J3	0.0	D8R9J3_SELML; Uncharacterized protein
STRING	EFJ30903	0.0	(Selaginella moellendorffii)

Link Out ? help Back to Top
Phytozome	408664
Entrez Gene	9632631

Publications ? help Back to Top
Banks JA, et al. The Selaginella genome identifies genetic changes associated with the evolution of vascular plants. Science, 2011. 332(6032): p. 960-3 [PMID:21551031]