PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

408692

Common Name

SELMODRAFT_408692

Organism

Selaginella moellendorffii

Taxonomic ID

88036

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella

Family

MYB_related

Protein Properties

Length: 189aa MW: 21086 Da PI: 9.8613

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
408692	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	40.4	6.8e-13	68	109	4	47
S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 WT eE +++++a k +G++ +++Ia+ +g +R+ q++ + qky 408692 68 WTNEERQRFKKALKTFGTD-FAAIAKFVG-TRSSTQVRTHAQKY 109 *****************.*****.***********9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51293	11.141	63	117	IPR017884	SANT domain
SMART	SM00717	2.8E-11	64	112	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	4.49E-12	65	112	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	2.0E-8	66	112	IPR006447	Myb domain, plants
Gene3D	G3DSA:1.10.10.60	4.5E-7	67	105	IPR009057	Homeodomain-like
Pfam	PF00249	7.4E-12	67	109	IPR001005	SANT/Myb domain
CDD	cd00167	3.89E-10	68	109	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 189 aa Download sequence Send to blast
MQAPRGQFLC PKFEIEPLDM AGGAMQMVPA PHLWIKQLLV LRAQGHQESL QSENKVKFSQ 60 RVSESRYWTN EERQRFKKAL KTFGTDFAAI AKFVGTRSST QVRTHAQKYY AKLIRDYKRS 120 GKAQAAAASG VKDKSGAANA RIATESSYIS LSACDLYSSL QAYIDFAAKL WDFSVVESLE 180 ETFNVSID*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024528586.1	6e-98	myb-like protein I
TrEMBL	D8R9M9	1e-137	D8R9M9_SELML; Uncharacterized protein
STRING	EFJ30923	1e-138	(Selaginella moellendorffii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP11644	4	7

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G09600.2	2e-10	MYB_related family protein

Link Out ? help Back to Top
Phytozome	408692
Entrez Gene	9630864

Publications ? help Back to Top
Banks JA, et al. The Selaginella genome identifies genetic changes associated with the evolution of vascular plants. Science, 2011. 332(6032): p. 960-3 [PMID:21551031]