PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

408741

Common Name

SELMODRAFT_408741

Organism

Selaginella moellendorffii

Taxonomic ID

88036

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella

Family

bHLH

Protein Properties

Length: 182aa MW: 20663.1 Da PI: 4.6764

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
408741	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	11.3	0.00063	119	151	18	55
HHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 18 safeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 + Lr+l+P + K e+L kA+eY++ Lq 408741 119 RQLRVLRRLIPDgN------KFHNEEMLDKAIEYVHFLQ 151 56677999999955......99999************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00353	0.0022	115	156	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	5.0E-7	116	160	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	3.01E-8	117	162	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 182 aa Download sequence Send to blast
MESRESLQST VVEEQSRGSV VVVAAEEERS NGGEEAEESG WTTYLDQQPL SLSPRVQEPQ 60 ARRPQKRSLA RQDSTLSVLS DASSGPLTDH RSQEQAGENI LKSLFNEDNE SEIDNAIERQ 120 LRVLRRLIPD GNKFHNEEML DKAIEYVHFL QRKIQIFESK WRCNLQEQGL CLIPVSMLKL 180 V*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024528641.1	1e-127	uncharacterized protein LOC9632831
TrEMBL	D8R9T5	1e-128	D8R9T5_SELML; Uncharacterized protein
STRING	EFJ31208	1e-129	(Selaginella moellendorffii)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G00120.1	2e-07	bHLH family protein

Link Out ? help Back to Top
Phytozome	408741
Entrez Gene	9632831

Publications ? help Back to Top
Banks JA, et al. The Selaginella genome identifies genetic changes associated with the evolution of vascular plants. Science, 2011. 332(6032): p. 960-3 [PMID:21551031]