PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

409324

Common Name

SELMODRAFT_409324

Organism

Selaginella moellendorffii

Taxonomic ID

88036

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella

Family

C3H

Protein Properties

Length: 326aa MW: 35513.4 Da PI: 6.8755

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
409324	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	20.7	7.6e-07	75	100	4	26
---SGGGGTS...--TTTTT-SS-SS CS zf-CCCH 4 elCrffartG...tCkyGdrCkFaHg 26 e C+ r G C++G++C+F+H+ 409324 75 EVCNAVVRAGdpnACPFGENCRFSHD 100 67777788888889***********7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.1000.10	1.3E-4	68	102	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	2.0E-4	71	101	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	12.793	71	102	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	2.8E-4	75	100	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	61	112	139	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	7.319	115	140	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:3.20.20.70	2.2E-10	260	306	IPR013785	Aldolase-type TIM barrel
SuperFamily	SSF51395	1.2E-6	264	302	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0002943	Biological Process	tRNA dihydrouridine synthesis
GO:0055114	Biological Process	oxidation-reduction process
GO:0017150	Molecular Function	tRNA dihydrouridine synthase activity
GO:0046872	Molecular Function	metal ion binding
GO:0050660	Molecular Function	flavin adenine dinucleotide binding

Sequence ? help Back to Top
Protein Sequence Length: 326 aa Download sequence Send to blast
MAAVEDRVEA EIVEENSANG AEGLIAKGVA PVKKEFLVSA QVRSTISDKD AAKISSEKKS 60 KRKIRKERKQ ARKLEVCNAV VRAGDPNACP FGENCRFSHD LEGYLAQKPE DLPGVCPSVN 120 LNVPCPYGVR CRFYGTHTKQ DLPKENPEGA MDGDEETSGA GEINVLRKDF QKSLWKKLES 180 FPKADSQLQA MGLKNKVYGP KKGATTEGEN GGAETHDENN DVSDDAVPPL KKPKLVDPVE 240 DAKEQGDDCK LNSREKKIID LKGKLYLAPL TTVGNLPFRR LCKKLGADVT CGEMAMCTNL 300 LQLAQEAATH QDLTAMLTKQ ESTQI*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	57	65	KKSKRKIRK

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024528884.1	0.0	tRNA-dihydrouridine(47) synthase [NAD(P)(+)]-like
TrEMBL	D8RB31	0.0	D8RB31_SELML; Uncharacterized protein
STRING	EFJ30419	0.0	(Selaginella moellendorffii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP5751	12	13

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G66810.1	1e-06	C3H family protein

Link Out ? help Back to Top
Phytozome	409324
Entrez Gene	9650133

Publications ? help Back to Top
Banks JA, et al. The Selaginella genome identifies genetic changes associated with the evolution of vascular plants. Science, 2011. 332(6032): p. 960-3 [PMID:21551031]