PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

409864

Common Name

SELMODRAFT_409864

Organism

Selaginella moellendorffii

Taxonomic ID

88036

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella

Family

Dof

Protein Properties

Length: 252aa MW: 28061 Da PI: 4.7133

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
409864	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	56.5	5.6e-18	52	116	3	60
zf-Dof 3 ekalkcprCdstntkfCyynny....slsqPryfCkaCrryWtkGGalrnv...PvGggrrknkk 60 ++ +cprC+s nt+f yynn + qPry C++C+ Wt+GG +r+v P Gg +r k+ 409864 52 DNVYQCPRCQSYNTRFDYYNNEkstgNRDQPRYACRSCKGKWTQGGKVRDVsqsPTGGNKRTLKS 116 67889**************73333567*******************988899999998765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	9.0E-10	51	115	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	2.2E-26	52	116	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	15.268	55	113	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 252 aa Download sequence Send to blast
MARGSKRSRE DDGIMVLTKK RRLRSERACK LTAEEVRDQN LYGVWEYHDL PDNVYQCPRC 60 QSYNTRFDYY NNEKSTGNRD QPRYACRSCK GKWTQGGKVR DVSQSPTGGN KRTLKSHGGD 120 KIAPVVQEEF VGESSQVMGD CVAGFDQTIY WEQSHGVSDC AQPFSHEGFD QNWKLLPGLG 180 QGPVGDCVQE VFAQTSELSD GVFADQVSQE FVGGVQGGDV QTSCWGQPQE FNDVFLDIEG 240 FLADLPEIQA C*

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002992665.1	1e-172	uncharacterized protein LOC9630524
TrEMBL	D8RCQ4	0.0	D8RCQ4_SELML; Uncharacterized protein
STRING	EFJ30177	0.0	(Selaginella moellendorffii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP38	17	445

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69570.1	2e-13	Dof family protein

Link Out ? help Back to Top
Phytozome	409864
Entrez Gene	9650984

Publications ? help Back to Top
Banks JA, et al. The Selaginella genome identifies genetic changes associated with the evolution of vascular plants. Science, 2011. 332(6032): p. 960-3 [PMID:21551031]