PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

410500

Common Name

SELMODRAFT_410500

Organism

Selaginella moellendorffii

Taxonomic ID

88036

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella

Family

NZZ/SPL

Protein Properties

Length: 428aa MW: 45206.4 Da PI: 8.5922

Description

NZZ/SPL family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
410500	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NOZZLE	23.1	1.3e-07	11	51	48	88
NOZZLE 48 gsktaqqkqkkptlrgmgvaklerfiieeekkklvvatvgd 88 sk +++ qkk rg+gva+ler +i+ee kk + a+ 410500 11 RSKKSKNGQKKQPQRGLGVAQLERLRIQEESKKAMLASSSF 51 57888888999999*************99988877666543 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF08744	1.2E-5	11	50	IPR014855	Plant transcription factor NOZZLE

Sequence ? help Back to Top
Protein Sequence Length: 428 aa Download sequence Send to blast
MAVPSDHQHR RSKKSKNGQK KQPQRGLGVA QLERLRIQEE SKKAMLASSS FAAAGSCFQA 60 QQGRVSALCL SAPHNPPLHL HHISPAQQGS GGGAAAAGRS SSSASPCSSQ HNSKPDHVFD 120 ESDESSRGAA AAAAPPFVFL GSSSSCSSEA NHRSTTIPLM IQPGSSSNNI VKDNLPESSE 180 MFDPLFRTRA RRVYGDGRDW PGIHTHGIPA IKELSSFQIP GNTIPALSSP NKACWTGARD 240 GVADLGSGYS GSVDKGSSVK MIATASSSPR SLSAASSWAR SEVCFSFEQQ LKDSCSSSLK 300 NAATITNSST NLEATSSTKP ASCDFLTLAL AAPDPRPQFH KRPSSGLPDL KPDDDESSKF 360 AVTTPQEASG ETDDHWLLKN HHQLARKSIK LQHFGTPSMA PASPFMLDLS LKVPSIEESS 420 LELKLAL*

Sequence ? help Back to Top

Protein Sequence Length: 428 aa Download sequence Send to blast

MAVPSDHQHR RSKKSKNGQK KQPQRGLGVA QLERLRIQEE SKKAMLASSS FAAAGSCFQA  60
QQGRVSALCL SAPHNPPLHL HHISPAQQGS GGGAAAAGRS SSSASPCSSQ HNSKPDHVFD  120
ESDESSRGAA AAAAPPFVFL GSSSSCSSEA NHRSTTIPLM IQPGSSSNNI VKDNLPESSE  180
MFDPLFRTRA RRVYGDGRDW PGIHTHGIPA IKELSSFQIP GNTIPALSSP NKACWTGARD  240
GVADLGSGYS GSVDKGSSVK MIATASSSPR SLSAASSWAR SEVCFSFEQQ LKDSCSSSLK  300
NAATITNSST NLEATSSTKP ASCDFLTLAL AAPDPRPQFH KRPSSGLPDL KPDDDESSKF  360
AVTTPQEASG ETDDHWLLKN HHQLARKSIK LQHFGTPSMA PASPFMLDLS LKVPSIEESS  420
LELKLAL*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024530177.1	0.0	uncharacterized protein LOC9646713
TrEMBL	D8REY4	0.0	D8REY4_SELML; Uncharacterized protein
STRING	EFJ29520	0.0	(Selaginella moellendorffii)

Link Out ? help Back to Top
Phytozome	410500
Entrez Gene	9646713

Publications ? help Back to Top
Banks JA, et al. The Selaginella genome identifies genetic changes associated with the evolution of vascular plants. Science, 2011. 332(6032): p. 960-3 [PMID:21551031]