PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

411193

Common Name

MADS8-1, SELMODRAFT_411193

Organism

Selaginella moellendorffii

Taxonomic ID

88036

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella

Family

M-type_MADS

Protein Properties

Length: 202aa MW: 22846.2 Da PI: 3.978

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
411193	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	25.4	1.8e-08	11	46	3	38
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEE CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevavi 38 i +++r tf kR +g KKAeEL +L+ a+v ++ 411193 11 IRQETKRRNTFRKRWEGARKKAEELHILTRARVRLM 46 77899***************************9874 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF55455	1.24E-10	1	58	IPR002100	Transcription factor, MADS-box
SMART	SM00432	0.001	1	59	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	13.274	1	46	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	4.6E-8	11	46	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 202 aa Download sequence Send to blast
MGRKPTDLAY IRQETKRRNT FRKRWEGARK KAEELHILTR ARVRLMARFE GVLYVYNSSA 60 ESDVNNGVAD NDHQQAQDDV NTSSVDDNGE GEDGGSENEN VYENDENENG DEDEEEESDG 120 DGDGDGDWDG NGEATFKPYQ LNFSDFSSDL SFASRDAVVP QDLEWCFERK TLEQQQQTTA 180 VTKVNYSELL TEDEVNGFLN F*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	D8RGV5	1e-145	D8RGV5_SELML; Type I MADS-box transcription factor
STRING	EFJ28430	1e-145	(Selaginella moellendorffii)

Link Out ? help Back to Top
Phytozome	411193
Entrez Gene	9632437

Publications ? help Back to Top
Banks JA, et al. The Selaginella genome identifies genetic changes associated with the evolution of vascular plants. Science, 2011. 332(6032): p. 960-3 [PMID:21551031]