PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

411605

Common Name

SELMODRAFT_411605

Organism

Selaginella moellendorffii

Taxonomic ID

88036

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella

Family

NZZ/SPL

Protein Properties

Length: 514aa MW: 54283.5 Da PI: 8.9785

Description

NZZ/SPL family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
411605	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NOZZLE	22.6	1.7e-07	11	51	48	88
NOZZLE 48 gsktaqqkqkkptlrgmgvaklerfiieeekkklvvatvgd 88 sk +++ qkk rg+gva+ler +i+ee kk + a+ 411605 11 RSKKSKNGQKKQPQRGLGVAQLERLRIQEESKKAMLASSSF 51 57888888999999*************99988877666543 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF08744	1.8E-5	11	50	IPR014855	Plant transcription factor NOZZLE

Sequence ? help Back to Top
Protein Sequence Length: 514 aa Download sequence Send to blast
MAVPSDHQHR RSKKSKNGQK KQPQRGLGVA QLERLRIQEE SKKAMLASSS FAAAGSCFQA 60 QQGRVSALCL SAPHNPPLHL HHISPAQQGS GGGAAAAYRP SNLPFLASLG TSASSRQHHK 120 ASLDPNLANI SQHSVIHQLD HALMAKIHGQ ASADSSSCKS GISSDVSAAA TVAASHHLFG 180 RRSGRSSSSP SPCSSQHNSK PDHVFDESDE SSRGAAAAAA PPFVFLGSSS SCSSEANHRN 240 TTIPLMIQPG SSSNNIIKDN LPESSEMFDP LFRTRARRVY GDGRDWPGIH THGIPAIKEL 300 SSFQIPGNTI PALSSPNKAC WTGARDGVAD LGSGYSGSVD KGSSVKMIAT ASSSPRSLSA 360 ASSWARSEVC FSFEQQLKDS CSSSLKNAAT ITNSSTNLEA TSSTKPASCD FLTLALAAPD 420 PRPQFHKRPS SGLPDLKPDD DESSKFAVTT PQEASGETDD HWLLKNHHQL ARKSIKLQHF 480 GTPSMVPASP FMLDLSLKVP SIEESSLELK LAL*

Sequence ? help Back to Top

Protein Sequence Length: 514 aa Download sequence Send to blast

MAVPSDHQHR RSKKSKNGQK KQPQRGLGVA QLERLRIQEE SKKAMLASSS FAAAGSCFQA  60
QQGRVSALCL SAPHNPPLHL HHISPAQQGS GGGAAAAYRP SNLPFLASLG TSASSRQHHK  120
ASLDPNLANI SQHSVIHQLD HALMAKIHGQ ASADSSSCKS GISSDVSAAA TVAASHHLFG  180
RRSGRSSSSP SPCSSQHNSK PDHVFDESDE SSRGAAAAAA PPFVFLGSSS SCSSEANHRN  240
TTIPLMIQPG SSSNNIIKDN LPESSEMFDP LFRTRARRVY GDGRDWPGIH THGIPAIKEL  300
SSFQIPGNTI PALSSPNKAC WTGARDGVAD LGSGYSGSVD KGSSVKMIAT ASSSPRSLSA  360
ASSWARSEVC FSFEQQLKDS CSSSLKNAAT ITNSSTNLEA TSSTKPASCD FLTLALAAPD  420
PRPQFHKRPS SGLPDLKPDD DESSKFAVTT PQEASGETDD HWLLKNHHQL ARKSIKLQHF  480
GTPSMVPASP FMLDLSLKVP SIEESSLELK LAL*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002970765.1	0.0	uncharacterized protein LOC9641310
TrEMBL	D8RIG8	0.0	D8RIG8_SELML; Uncharacterized protein
STRING	EFJ28091	0.0	(Selaginella moellendorffii)

Link Out ? help Back to Top
Phytozome	411605
Entrez Gene	9641310

Publications ? help Back to Top
Banks JA, et al. The Selaginella genome identifies genetic changes associated with the evolution of vascular plants. Science, 2011. 332(6032): p. 960-3 [PMID:21551031]