PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

412326

Common Name

SELMODRAFT_412326

Organism

Selaginella moellendorffii

Taxonomic ID

88036

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella

Family

bHLH

Protein Properties

Length: 259aa MW: 28573.6 Da PI: 5.9956

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
412326	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	12.1	0.00036	227	252	4	29
HHHHHHHHHHHHHHHHHHHHHCTSCC CS HLH 4 ahnerErrRRdriNsafeeLrellPk 29 +h +Er RR++ + +++L++ +P+ 412326 227 NHMLAERSRRSKESEHLATLKKFIPQ 252 68899********************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	8.594	223	258	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 259 aa Download sequence Send to blast
MEMEALYDPE AWSFPGAATG HESAFSLSSA GASSGGGFLE PNDDHELQAH IQQLSRSFDG 60 TEAFQLFDHD SIVVQGLSRV DFPLETGRGA GFQQQHFEQP LPVMAVKEEA VPVEQVEIHP 120 GKAFQYWSPG IESTAHTHGH GCRKKSMACS ILDLYRQVHE REQLQSRASS SSAAPEDVTL 180 QQQHQQQQLE IQAPSSQVAQ AQDLQHQPLI QFQSNPRAPA QTPASYNHML AERSRRSKES 240 EHLATLKKFI PQGTLKKV*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002971748.2	0.0	uncharacterized protein LOC9640000
TrEMBL	D8RKT0	0.0	D8RKT0_SELML; Uncharacterized protein
STRING	EFJ27497	0.0	(Selaginella moellendorffii)

Link Out ? help Back to Top
Phytozome	412326
Entrez Gene	9640000

Publications ? help Back to Top
Banks JA, et al. The Selaginella genome identifies genetic changes associated with the evolution of vascular plants. Science, 2011. 332(6032): p. 960-3 [PMID:21551031]