PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 412681
Common NameSELMODRAFT_412681, SELMODRAFT_417246
Organism
Selaginella moellendorffii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella
Family bHLH
Protein Properties Length: 189aa    MW: 20674.7 Da    PI: 5.0147
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
412681genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH44.43.1e-142470354
            HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
     HLH  3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
            ++h+e+ErrRR+riN+ +++Lr+llP+       K +Ka+ L +++e Ik+L
  412681 24 KSHSEAERRRRERINKHLSTLRTLLPNT-----AKTDKASLLAEVIERIKEL 70
            79*************************6.....5****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088816.6912170IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000108.4E-122470IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.8E-152479IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.17E-52475No hitNo description
SuperFamilySSF474591.44E-152579IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.0E-132776IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd048732.80E-9110176No hitNo description
SuperFamilySSF550211.6E-5110178No hitNo description
Gene3DG3DSA:3.30.70.2602.0E-6110172No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 189 aa     Download sequence    Send to blast
MTDLLSLCKS SAQADNAKAL AASKSHSEAE RRRRERINKH LSTLRTLLPN TAKTDKASLL  60
AEVIERIKEL KQQVAEISQF GPVPSDADEL DVDVMESPVD EGGKVLIKAS ICCADRPSLL  120
TDLVRTLKSL HLRTVKAEMA TMEGRTKNVF VMTIKDDAEL LEPTLACVEE ALKSVMEEPS  180
SKENQDDA*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12934ERRRRE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002971937.11e-133transcription factor bHLH30
RefseqXP_002977306.11e-133transcription factor bHLH30
SwissprotQ9S7Y19e-47BH030_ARATH; Transcription factor bHLH30
TrEMBLD8RL491e-131D8RL49_SELML; Uncharacterized protein
STRINGEFJ213101e-132(Selaginella moellendorffii)
STRINGEFJ268541e-132(Selaginella moellendorffii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP37715106
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68810.11e-41bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Banks JA, et al.
    The Selaginella genome identifies genetic changes associated with the evolution of vascular plants.
    Science, 2011. 332(6032): p. 960-3
    [PMID:21551031]
  3. Ohashi-Ito K, et al.
    A bHLH complex activates vascular cell division via cytokinin action in root apical meristem.
    Curr. Biol., 2014. 24(17): p. 2053-8
    [PMID:25131670]
  4. Katayama H, et al.
    A Negative Feedback Loop Controlling bHLH Complexes Is Involved in Vascular Cell Division and Differentiation in the Root Apical Meristem.
    Curr. Biol., 2015. 25(23): p. 3144-50
    [PMID:26616019]