PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

413205

Common Name

SELMODRAFT_413205

Organism

Selaginella moellendorffii

Taxonomic ID

88036

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella

Family

MYB_related

Protein Properties

Length: 763aa MW: 85700.2 Da PI: 9.7507

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
413205	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	28.6	3.2e-09	16	47	1	32
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg 32 rg+WT eEd ll ++v+++G g+W+t ++ 413205 16 RGPWTREEDTLLTQYVNEHGEGSWRTLPKAAE 47 89************************998665 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	3.2E-10	7	45	IPR009057	Homeodomain-like
SuperFamily	SSF46689	2.17E-7	10	45	IPR009057	Homeodomain-like
PROSITE profile	PS50090	7.201	11	44	IPR017877	Myb-like domain
Pfam	PF00249	9.3E-7	16	44	IPR001005	SANT/Myb domain
CDD	cd00167	4.30E-4	18	44	No hit	No description
Gene3D	G3DSA:1.25.10.10	8.0E-12	337	647	IPR011989	Armadillo-like helical
SuperFamily	SSF48371	3.84E-15	339	724	IPR016024	Armadillo-type fold

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0016021	Cellular Component	integral component of membrane
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 763 aa Download sequence Send to blast
MQMGRSPCCE KIGLNRGPWT REEDTLLTQY VNEHGEGSWR TLPKAAESFK GHSLPVPPRV 60 PFTLRTSELW SVFSPHPEVE QQPSTPKPSA PVKWSYLRRR GQQSSTPEPS ANSQSPEQRL 120 NLIAFRLAVL EKFATGLGKL AFVWATVVLL GGFVSNIPAK DFWTISALLL TEGTRVFSRS 180 SELEWQQANY SLGTLGFSSF VFDKSARLRQ TFSAAFDHDH PEQNVSRDRL SKNPVKKDLY 240 QGFGARRTWS VGSVPFLPYV KSLPTRIISL FMYFLQLASA TVTVCFSVYR LAEHGFNAQG 300 KNTEQALTVF YAMMLAETSL FLLERAYWEF KLHYQRRFNK RNATEDGVVE RLLEMITWKD 360 RSEAEIRKAA TIVIRHLVHH RRNCFRISAI PGSLEALTAL LAARKEEEVL EEKSYRLTIL 420 NGLAVDHRIS VRIGNTSGLI SILVEFIQDE RRKEVCRQSL KLLKKLARVG GDSGRSLRKK 480 MVSVVPAVRS LQRMCNLKDL ELQGLAVDVI KLLATEDELR DCIGATGGVI QSLMAIFTRE 540 TAPKSKQLII AMKAGEAIIV LVFQCPNNCS RLLMHKSYRQ GGVSKTLKSL INMLTKPVGV 600 HAAIILRSLC GDLNDEEKLE LGAAISPIIQ MVLESTDMEQ LAAIGLAAAI IPWLNFEQGV 660 LSQQSRLCEK FRELLSHTAP SRSLNCIRRY SVELLNSLMA KDARFLRRFR EDGEMEASLE 720 AMLATASDEE NFLTFSGFVG LIKYSSSIEE LVKIALSNLH RL*

Sequence ? help Back to Top

Protein Sequence Length: 763 aa Download sequence Send to blast

MQMGRSPCCE KIGLNRGPWT REEDTLLTQY VNEHGEGSWR TLPKAAESFK GHSLPVPPRV  60
PFTLRTSELW SVFSPHPEVE QQPSTPKPSA PVKWSYLRRR GQQSSTPEPS ANSQSPEQRL  120
NLIAFRLAVL EKFATGLGKL AFVWATVVLL GGFVSNIPAK DFWTISALLL TEGTRVFSRS  180
SELEWQQANY SLGTLGFSSF VFDKSARLRQ TFSAAFDHDH PEQNVSRDRL SKNPVKKDLY  240
QGFGARRTWS VGSVPFLPYV KSLPTRIISL FMYFLQLASA TVTVCFSVYR LAEHGFNAQG  300
KNTEQALTVF YAMMLAETSL FLLERAYWEF KLHYQRRFNK RNATEDGVVE RLLEMITWKD  360
RSEAEIRKAA TIVIRHLVHH RRNCFRISAI PGSLEALTAL LAARKEEEVL EEKSYRLTIL  420
NGLAVDHRIS VRIGNTSGLI SILVEFIQDE RRKEVCRQSL KLLKKLARVG GDSGRSLRKK  480
MVSVVPAVRS LQRMCNLKDL ELQGLAVDVI KLLATEDELR DCIGATGGVI QSLMAIFTRE  540
TAPKSKQLII AMKAGEAIIV LVFQCPNNCS RLLMHKSYRQ GGVSKTLKSL INMLTKPVGV  600
HAAIILRSLC GDLNDEEKLE LGAAISPIIQ MVLESTDMEQ LAAIGLAAAI IPWLNFEQGV  660
LSQQSRLCEK FRELLSHTAP SRSLNCIRRY SVELLNSLMA KDARFLRRFR EDGEMEASLE  720
AMLATASDEE NFLTFSGFVG LIKYSSSIEE LVKIALSNLH RL*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024517643.1	0.0	uncharacterized protein LOC9656766
TrEMBL	D8RNP3	0.0	D8RNP3_SELML; Uncharacterized protein
STRING	EFJ25902	0.0	(Selaginella moellendorffii)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G35515.1	3e-16	high response to osmotic stress 10

Link Out ? help Back to Top
Phytozome	413205
Entrez Gene	9637005

Publications ? help Back to Top
Banks JA, et al. The Selaginella genome identifies genetic changes associated with the evolution of vascular plants. Science, 2011. 332(6032): p. 960-3 [PMID:21551031]