PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 413208
Common NameSELMODRAFT_413208
Organism
Selaginella moellendorffii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella
Family MYB_related
Protein Properties Length: 818aa    MW: 91275.9 Da    PI: 6.4217
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
413208genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding292.5e-091653133
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....T CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg.....k 33
                     rg+WT eEd ll ++v+++G g+W+t +   g     k
           413208 16 RGPWTREEDTLLTQYVNEHGEGSWRTLPMAAGtaesfK 53
                     89************************998888444444 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.5E-9743IPR009057Homeodomain-like
SuperFamilySSF466893.59E-71047IPR009057Homeodomain-like
PROSITE profilePS5129410.0891164IPR017930Myb domain
SMARTSM007171.2E-41562IPR001005SANT/Myb domain
PfamPF002491.1E-61643IPR001005SANT/Myb domain
CDDcd001676.42E-41840No hitNo description
SuperFamilySSF483711.36E-16357623IPR016024Armadillo-type fold
Gene3DG3DSA:1.25.10.104.0E-18360772IPR011989Armadillo-like helical
CDDcd000201.67E-4366471No hitNo description
PROSITE profilePS501768.697489519IPR000225Armadillo
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 818 aa     Download sequence    Send to blast
MQMGRSPCCE KIGLNRGPWT REEDTLLTQY VNEHGEGSWR TLPMAAGTAE SFKGHCLNLE  60
SPFKFLLPAL LSLLHLQALE PPIPSSAPVK RYNSRSPEQL NLIAFRLAVL EKFATGLGKL  120
AFVWATVVLL GGFVTNIQAK DFWTISALLL TEGTRVFSRS SELEWQQANY SLGILGFRSF  180
VFDKSARLWE KFSGVLDHDH SEQNVSRDRL SKTPVKKDLH QGFAARRTSS ATRIISLFMY  240
FLQLASATVT ICFSVYRLAD NAQGNNTEHG FNAQGNNTEP QGNNTEQALT VFYAMMLAET  300
SLFLLERAYW EFKLRYQRLL EVVIQTSEPD QVDIETMKQY WYTLYSRSLN GSVFDGLGMD  360
LIDFTVEKLQ SSIREEQLGS VKILSALVSK GDSMEETQRR IGTTPGVVER LLEMITWKDL  420
SEAEIRKAAT IVIKHLVRHS HNCFRISAIP GSLEAITALL AATEEEVLEV LNRLAVDYRT  480
CVRIGHTSGL ISILVEFIQD EETSKEVFRQ SLELLKTLAN VRGDSGRSLR KKIVSVVPAV  540
RSLQRICNLE DLELQDLAVD VIKLLATEDE LRDCIGATGG VIQSLMAIFA RETAPNSDQL  600
SIAMRAGEAI IVLVFKCPNN CSRLLMHKSC RQGGVSKTLK SLINMLTKPV GVHAATILRS  660
LCGDLNDEEK LELGAAISPI IQMVLESTDK EQQAAIGLAA AIIPWLDTRN FEQGVLSQQS  720
RLCEKFTELL SHTAPSRSLN CIRRYTVELL NSLMAKDARF LRRFREDGEM EAFLEAMSAT  780
ASDEENFLTF SGFVGLTKHS SSLEELVNSA LLNLHRL*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024517643.10.0uncharacterized protein LOC9656766
TrEMBLD8RNP60.0D8RNP6_SELML; Uncharacterized protein
STRINGEFJ259040.0(Selaginella moellendorffii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22640.12e-16myb domain protein 3
Publications ? help Back to Top
  1. Banks JA, et al.
    The Selaginella genome identifies genetic changes associated with the evolution of vascular plants.
    Science, 2011. 332(6032): p. 960-3
    [PMID:21551031]