PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

413715

Common Name

SELMODRAFT_413715

Organism

Selaginella moellendorffii

Taxonomic ID

88036

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella

Family

bZIP

Protein Properties

Length: 176aa MW: 19577 Da PI: 6.8045

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
413715	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	31.8	3e-10	49	105	3	59
XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevakl 59 +l++ +r+q+NRe+A+rsR++K+ ++ee ++ + L ++N L+ +++ +e+ +l 413715 49 KLRKKKRMQSNRESAKRSRLKKQIQLEETTQLLEHLRQQNGLLRYKVSLAVNEYREL 105 6899****************************************9999888888776 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	2.2E-7	46	105	No hit	No description
SMART	SM00338	4.4E-7	47	111	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	9.576	49	112	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	3.9E-8	49	105	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	2.18E-7	50	106	No hit	No description
CDD	cd14702	2.33E-13	52	103	No hit	No description
PROSITE pattern	PS00036	0	54	69	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 176 aa Download sequence Send to blast
MFEFSSDSSG GIACDFKGVT MPEVHLEVED FLIQDQAGDE DDEEENLTKL RKKKRMQSNR 60 ESAKRSRLKK QIQLEETTQL LEHLRQQNGL LRYKVSLAVN EYRELMLRNR ELRMNAHNLS 120 YRLQYLDLAA SSLSINTTTA APVAAVSSPA TASAAAAAAA AASAWISERK LSSRE*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024534092.1	1e-126	basic leucine zipper 43 isoform X5
TrEMBL	D8RPZ9	1e-124	D8RPZ9_SELML; Uncharacterized protein
STRING	EFJ25768	1e-125	(Selaginella moellendorffii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP551	16	78

Link Out ? help Back to Top
Phytozome	413715
Entrez Gene	9637947

Publications ? help Back to Top
Banks JA, et al. The Selaginella genome identifies genetic changes associated with the evolution of vascular plants. Science, 2011. 332(6032): p. 960-3 [PMID:21551031]