PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

414340

Common Name

SELMODRAFT_414340

Organism

Selaginella moellendorffii

Taxonomic ID

88036

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella

Family

bZIP

Protein Properties

Length: 138aa MW: 16009.2 Da PI: 10.4085

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
414340	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	23.5	1.2e-07	105	133	3	31
XXCHHHCHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 3 elkrerrkqkNReAArrsRqRKkaeieeL 31 + k rr+ +NReAAr++ + +ka++++L 414340 105 SPKPLRRLTQNREAARKCWLTRKAYVQQL 133 557789**********************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	8.8E-5	99	133	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 138 aa Download sequence Send to blast
MWFCGVKPGI KVTQRHANGD QFVHFRVNIP VMSDRQRQRY ILSSWISFFS PAFPNFHVHY 60 KTDIYYAHQK VASDRNLELD SNANTKWGMA DTSPLTDNSI DVEPSPKPLR RLTQNREAAR 120 KCWLTRKAYV QQLVKPT*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002980439.2	8e-26	transcription factor TGA2.3 isoform X2
Refseq	XP_024541054.1	1e-25	transcription factor TGA2.3 isoform X1
Refseq	XP_024544903.1	1e-25	transcription factor TGA2.3 isoform X1
Refseq	XP_024544912.1	8e-26	transcription factor TGA2.3 isoform X2
TrEMBL	D8RSE9	1e-100	D8RSE9_SELML; Uncharacterized protein
STRING	EFJ25056	1e-100	(Selaginella moellendorffii)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G06839.1	7e-09	bZIP family protein

Link Out ? help Back to Top
Phytozome	414340
Entrez Gene	9656693

Publications ? help Back to Top
Banks JA, et al. The Selaginella genome identifies genetic changes associated with the evolution of vascular plants. Science, 2011. 332(6032): p. 960-3 [PMID:21551031]