PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

414957

Common Name

SELMODRAFT_414957

Organism

Selaginella moellendorffii

Taxonomic ID

88036

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella

Family

C2H2

Protein Properties

Length: 158aa MW: 18016.7 Da PI: 4.4731

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
414957	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	22.2	3.6e-07	122	144	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C++C ++F+ + +Lk+H+ +H 414957 122 YPCSICERVFKYSWHLKNHQLVH 144 99******************998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	1.28E-6	115	147	No hit	No description
SMART	SM00355	0.0059	122	144	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	11.635	122	149	IPR007087	Zinc finger, C2H2
Gene3D	G3DSA:3.30.160.60	5.7E-7	122	147	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE pattern	PS00028	0	124	144	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 158 aa Download sequence Send to blast
MARRKKRKRA NASGRPEVAP SIDALNARDD QQSKQMVVYA DTSGFLGRQE EEAKEGQEVK 60 EEEVLMLELN PVSDPVEEDD DDDDDEEEEE DDEEEQLPGS SKRSPSRSKA LKRTRTYKTG 120 IYPCSICERV FKYSWHLKNH QLVHSDEVTC HFASDLV*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	2	8	RRKKRKR
2	3	8	RKKRKR

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002974624.2	1e-104	cell wall integrity transcriptional regulator CAS5
Refseq	XP_024535222.1	1e-104	cell wall integrity transcriptional regulator CAS5
TrEMBL	D8RU52	1e-112	D8RU52_SELML; Uncharacterized protein
STRING	EFJ24144	1e-112	(Selaginella moellendorffii)

Link Out ? help Back to Top
Phytozome	414957
Entrez Gene	9636752

Publications ? help Back to Top
Banks JA, et al. The Selaginella genome identifies genetic changes associated with the evolution of vascular plants. Science, 2011. 332(6032): p. 960-3 [PMID:21551031]