PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

415191

Common Name

SELMODRAFT_415191

Organism

Selaginella moellendorffii

Taxonomic ID

88036

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella

Family

Dof

Protein Properties

Length: 204aa MW: 23169.3 Da PI: 9.4791

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
415191	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	35.4	2.2e-11	141	186	3	48
zf-Dof 3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrn 48 e+ ++c C+s ntk ynn +++q ry C C+ +t+GG lr 415191 141 EQPVRCVFCESFNTKCEGYNNNNVKQKRYRCYDCKNRFTEGGKLRK 186 68899***************************************95 PP
2	zf-C2H2	11.5	0.00093	169	188	1	20
EEETTTTEEESSHHHHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLkrHi 20 y+C dC+ +F+ L++H 415191 169 YRCYDCKNRFTEGGKLRKHR 188 9******************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	2.0E-4	137	185	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	2.0E-11	142	186	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 204 aa Download sequence Send to blast
MDYYMLDHYR AIDSWEPRTF YYATDEEEGL ALYQQKMAAR EFYVQQLQNK VAEEASAAMD 60 PFTSAYGVDL RGFTRRLALA PDHPVAPASQ VPATQARVSN PPLTVTTRAR SLASAPRPSS 120 PSGVRVCSPI TTTTAMKPSD EQPVRCVFCE SFNTKCEGYN NNNVKQKRYR CYDCKNRFTE 180 GGKLRKHREI KAMLMKRKRE QGF*

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	D8RVB5	1e-151	D8RVB5_SELML; Uncharacterized protein
STRING	EFJ23928	1e-152	(Selaginella moellendorffii)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G45610.1	5e-08	Dof family protein

Link Out ? help Back to Top
Phytozome	415191
Entrez Gene	9637833

Publications ? help Back to Top
Banks JA, et al. The Selaginella genome identifies genetic changes associated with the evolution of vascular plants. Science, 2011. 332(6032): p. 960-3 [PMID:21551031]