PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

415574

Common Name

SELMODRAFT_415574

Organism

Selaginella moellendorffii

Taxonomic ID

88036

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella

Family

ERF

Protein Properties

Length: 215aa MW: 24627 Da PI: 4.7937

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
415574	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	45.6	1.7e-14	111	154	2	50
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaar 50 +y+GVr k+ rW+AeIr p + +r++lg+++ aeeAa+a+++a+ 415574 111 RYRGVR--KRGERWAAEIRNP-----HarARVWLGTYDNAEEAARAYDRAA 154 79*6..6679****8.....456******************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF00847	3.8E-9	111	154	IPR001471	AP2/ERF domain
PROSITE profile	PS51032	19.862	111	167	IPR001471	AP2/ERF domain
Gene3D	G3DSA:3.30.730.10	6.6E-25	111	168	IPR001471	AP2/ERF domain
SMART	SM00380	4.1E-25	111	173	IPR001471	AP2/ERF domain
CDD	cd00018	6.85E-24	111	169	No hit	No description
SuperFamily	SSF54171	2.48E-17	111	168	IPR016177	DNA-binding domain
PRINTS	PR00367	5.2E-5	112	123	IPR001471	AP2/ERF domain
PRINTS	PR00367	5.2E-5	133	149	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 215 aa Download sequence Send to blast
MENSAAAVDD IDHRELVEHY QDHGDVTREG KEEAAEQLPE LQGLESFEPW YFDKEFECSS 60 FSAPSPVHEL PGLDDAPTEA VESEPPKRRR SFSDYSHGSS RARQAMDRER RYRGVRKRGE 120 RWAAEIRNPH ARARVWLGTY DNAEEAARAY DRAAVGFKGI RAHLNFPDDP REQFEMFPQP 180 RDRAGEEMNM PPLQGISPTT MAQFQTWSPS EYLV*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1gcc_A	3e-12	112	167	3	60	ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A	3e-12	112	167	6	63	ATERF1
3gcc_A	3e-12	112	167	6	63	ATERF1
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024524543.1	1e-143	ethylene-responsive transcription factor ERF112-like
TrEMBL	D8RWJ8	1e-156	D8RWJ8_SELML; Uncharacterized protein
STRING	EFJ23676	1e-157	(Selaginella moellendorffii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP6	16	1718

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G50080.1	5e-09	ethylene response factor 110

Link Out ? help Back to Top
Phytozome	415574
Entrez Gene	9630004

Publications ? help Back to Top
Banks JA, et al. The Selaginella genome identifies genetic changes associated with the evolution of vascular plants. Science, 2011. 332(6032): p. 960-3 [PMID:21551031]