PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 416330
Common NameSELMODRAFT_416330
Organism
Selaginella moellendorffii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella
Family C3H
Protein Properties Length: 360aa    MW: 41849.6 Da    PI: 10.4416
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
416330genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH23.97.4e-08338357525
              --SGGGGTS--TTTTT-SS-S CS
  zf-CCCH   5 lCrffartGtCkyGdrCkFaH 25 
               Crf+ + G+C+ G++C F H
   416330 338 ACRFYDK-GYCRNGAKCAFLH 357
              7******.************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF552773.27E-8158203IPR003169GYF domain
PROSITE profilePS508299.642159213IPR003169GYF domain
Gene3DG3DSA:3.30.1490.404.4E-9161216IPR003169GYF domain
Gene3DG3DSA:3.30.1490.401.2E-4226275IPR003169GYF domain
PROSITE profilePS5010313.056333359IPR000571Zinc finger, CCCH-type
SMARTSM003560.0011334359IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.24E-5337357IPR000571Zinc finger, CCCH-type
PfamPF006421.6E-5338358IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.1E-4339357IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 360 aa     Download sequence    Send to blast
MATLRLFGKN IVVRPSPPPQ LSPPSTTISP APPPLPPSPP RPPPTMISPA PPPPPKADAI  60
ERKDPAERKH WHRFGDTAGV DRKPRSRDRE DDRQRSDREN HHHHRKGSER NNLQQQRDDR  120
DGANHHRHES LHPRQDRRPE RPHYPQERKE GEKGGKIDEE LWHYTSSTGK TQGPYSIHLL  180
KKWRSMDILT GAIRVWRRGA APATDSIDLA ALIDYYDEAG NAGIQTWMYQ DAKGALQGPR  240
SLDELRSRIA RLPEELKIWK IGQSQERVLF RDLAKIGDDR GSKSPQRRRS REEEEEGEEA  300
ARKRARRERE REREENRHHH HHHRDRDRER EWRPPGVACR FYDKGYCRNG AKCAFLHLT*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024516775.11e-180uncharacterized protein LOC112341218
TrEMBLD8RYY40.0D8RYY4_SELML; Uncharacterized protein
STRINGEFJ226520.0(Selaginella moellendorffii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G51120.12e-06DNA binding;zinc ion binding;nucleic acid binding;nucleic acid binding
Publications ? help Back to Top
  1. Banks JA, et al.
    The Selaginella genome identifies genetic changes associated with the evolution of vascular plants.
    Science, 2011. 332(6032): p. 960-3
    [PMID:21551031]