PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 416803
Common NameSELMODRAFT_416803
Organism
Selaginella moellendorffii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella
Family C3H
Protein Properties Length: 426aa    MW: 46776.8 Da    PI: 9.6241
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
416803genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH46.94.4e-151137127
             --S---SGGGGTS--TTTTT-SS-SSS CS
  zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHgp 27
             yktelCr + +tG C+yG++C+FaHg+
   416803 11 YKTELCRSWEETGSCRYGNKCQFAHGK 37
             9************************96 PP
2zf-CCCH42.41.1e-134973125
             --S---SGGGGTS--TTTTT-SS-S CS
  zf-CCCH  1 yktelCrffartGtCkyGdrCkFaH 25
             ykte Cr+f++ GtC+yG rC+F+H
   416803 49 YKTEVCRTFSAAGTCPYGKRCRFIH 73
             9************************ PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.101.2E-18943IPR000571Zinc finger, CCCH-type
SMARTSM003561.8E-91037IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.96E-101041IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.8021038IPR000571Zinc finger, CCCH-type
PfamPF006424.2E-121137IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.02E-94578IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.3E-144574IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.1174876IPR000571Zinc finger, CCCH-type
SMARTSM003567.0E-94875IPR000571Zinc finger, CCCH-type
PfamPF006422.6E-104973IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005739Cellular Componentmitochondrion
GO:0009507Cellular Componentchloroplast
GO:0016020Cellular Componentmembrane
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 426 aa     Download sequence    Send to blast
MAEESDASKL YKTELCRSWE ETGSCRYGNK CQFAHGKEDL RPVNRHPKYK TEVCRTFSAA  60
GTCPYGKRCR FIHATPKLSD VKLPPLVAPA MNLTKLLLHD NAAAMAPRSR LPAMEGLALA  120
LDSSSSNALH SAALLSASSV AGIASLFPRN WAFCDAKVDS SEDDWLGRWM PTYGTEESKR  180
YAFKTYDIEL KPLFSAFRPK ALGTTGLRAL LVNFLPLLEA YMKVEEDEDD EEDRPTETSP  240
DFRLAFKRSG THAFREVSVI TVRRVLERIV EQVVSARTAW KLLKDVPKSA VRKARRHITK  300
IELFTGVAKT TFRAHALGVG ASCLVQEVLD IYRSGRVIYI HRQNPGRAKG NKKEIDVLHS  360
LARRTAGNSL KAVASLTCAS IGAGCGAVLI KPSTGTWIGL AVGDLAGAFL VGYCLDSWIY  420
KTSSS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1rgo_A7e-29873166Butyrate response factor 2
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024537624.10.0uncharacterized protein LOC9649803
TrEMBLD8S0G50.0D8S0G5_SELML; Uncharacterized protein
STRINGEFJ220490.0(Selaginella moellendorffii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66810.12e-25C3H family protein
Publications ? help Back to Top
  1. Banks JA, et al.
    The Selaginella genome identifies genetic changes associated with the evolution of vascular plants.
    Science, 2011. 332(6032): p. 960-3
    [PMID:21551031]