PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

416804

Common Name

SELMODRAFT_416804

Organism

Selaginella moellendorffii

Taxonomic ID

88036

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella

Family

C2H2

Protein Properties

Length: 363aa MW: 41498.2 Da PI: 9.2517

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
416804	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13.4	0.00024	145	168	1	23
EEETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt.H 23 ykC++Cg++ s++++L +H + H 416804 145 YKCGYCGRTLSSHHSLYKHFKQiH 168 9******************98766 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50157	12.404	145	173	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	147	168	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 363 aa Download sequence Send to blast
MLVSRLGYGG RALLSKCRRL AQGKRNLHTI DSSDEDRGVD HTGFTEDDEE EAQEQEEQGR 60 RVVIVWDITT SKPPVSMDPQ VAALRVRDLA DAFGFVVDRS AYAEPRIPVT DARPRTYYEE 120 KFMASQLKPV WYQDVPHQSA EDYVYKCGYC GRTLSSHHSL YKHFKQIHAP ERAKRVHKLN 180 RIHRGQRRDE YALAMADKEQ RYRAALREIV MPKLVVSDEL CSALTRAGFL VRLVTEKPLR 240 HLFLTAQESA VINHLWQAAW LNIACIVLVS DSCRFGDFIR LAREQRGVKF VGISDGLSEF 300 RMGVDLFISW EEIERGRGYV WATEAARAWF SGPRLFAKRS TLRKRQKYGG GGGGGEFDPF 360 RE*

Sequence ? help Back to Top

Protein Sequence Length: 363 aa Download sequence Send to blast

MLVSRLGYGG RALLSKCRRL AQGKRNLHTI DSSDEDRGVD HTGFTEDDEE EAQEQEEQGR  60
RVVIVWDITT SKPPVSMDPQ VAALRVRDLA DAFGFVVDRS AYAEPRIPVT DARPRTYYEE  120
KFMASQLKPV WYQDVPHQSA EDYVYKCGYC GRTLSSHHSL YKHFKQIHAP ERAKRVHKLN  180
RIHRGQRRDE YALAMADKEQ RYRAALREIV MPKLVVSDEL CSALTRAGFL VRLVTEKPLR  240
HLFLTAQESA VINHLWQAAW LNIACIVLVS DSCRFGDFIR LAREQRGVKF VGISDGLSEF  300
RMGVDLFISW EEIERGRGYV WATEAARAWF SGPRLFAKRS TLRKRQKYGG GGGGGEFDPF  360
RE*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002980544.1	0.0	uncharacterized protein LOC9656304
TrEMBL	D8S0G6	0.0	D8S0G6_SELML; Uncharacterized protein
STRING	EFJ21924	0.0	(Selaginella moellendorffii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP3048	14	20

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G52010.1	2e-25	C2H2-like zinc finger protein

Link Out ? help Back to Top
Phytozome	416804
Entrez Gene	9638397

Publications ? help Back to Top
Banks JA, et al. The Selaginella genome identifies genetic changes associated with the evolution of vascular plants. Science, 2011. 332(6032): p. 960-3 [PMID:21551031]