PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

417095

Common Name

SELMODRAFT_417095

Organism

Selaginella moellendorffii

Taxonomic ID

88036

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella

Family

GRAS

Protein Properties

Length: 246aa MW: 27435.6 Da PI: 6.9846

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
417095	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	24.8	2.5e-08	183	231	287	338
GRAS 287 rellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqak 338 +++ +r+i+ +vaceg + r+ t++ W +r+++aGF+ v+++e+++++++ 417095 183 QKVAARDIMTIVACEGLD---RTDTYRIWDARVKRAGFEGVAVTEEIYEKVS 231 56789**********9...9999******************9998876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50969	17.19	1	153	IPR004274	FCP1 homology domain
Gene3D	G3DSA:3.40.50.1000	3.0E-23	2	164	IPR023214	HAD-like domain
Pfam	PF03031	2.0E-24	2	160	IPR004274	FCP1 homology domain
SuperFamily	SSF56784	7.0E-22	2	163	IPR023214	HAD-like domain
SMART	SM00577	5.4E-4	2	141	IPR004274	FCP1 homology domain
Pfam	PF03514	8.5E-6	183	231	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 246 aa Download sequence Send to blast
MTVALDLDTS ILLHQRSQCD FKVRDNCSRK CIKKQLHLDE FLDALALFAK VVLFSSAPYA 60 ACVVKQLDPR GTHFQYVLGL SDCMLWHDTR LGKEALFKDL AILGRDLHKV VLVDDDPGFF 120 CQPGSGNEIV IGKFTGQRSD DELLKLLPVL QSLAQLDDVR PAVRTYQQPQ AQEGNKPGSG 180 YIQKVAARDI MTIVACEGLD RTDTYRIWDA RVKRAGFEGV AVTEEIYEKV SGACASRNKE 240 VKERM*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	D8S1C3	0.0	D8S1C3_SELML; Uncharacterized protein
STRING	EFJ21686	0.0	(Selaginella moellendorffii)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G29060.1	5e-07	GRAS family protein

Link Out ? help Back to Top
Phytozome	417095
Entrez Gene	9638661

Publications ? help Back to Top
Banks JA, et al. The Selaginella genome identifies genetic changes associated with the evolution of vascular plants. Science, 2011. 332(6032): p. 960-3 [PMID:21551031]