PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 417475
Common NameKN5-2, SELMODRAFT_417475
Organism
Selaginella moellendorffii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella
Family HB-other
Protein Properties Length: 106aa    MW: 12364.4 Da    PI: 10.9694
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
417475genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox28.32.9e-0931781054
              HHHHHHHHHHH...HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
  Homeobox 10 eqleeLeelFe...knrypsaeereeLAkklgLterqVkvWFqNrRak 54
              +    +e++F+   k++ p+ +e+  LA+++ L+ rq+ +WF N+R +
    417475 31 YIRGLMEDCFKkkkKKKFPKGDEKSNLAQSTWLKPRQINNWFINQRKR 78
              55667999**95544889****************************88 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007110.9971982IPR001356Homeobox domain
SMARTSM003895.4E-72186IPR001356Homeobox domain
SuperFamilySSF466897.7E-132588IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.4E-163387IPR009057Homeodomain-like
PfamPF059207.0E-104878IPR008422Homeobox KN domain
CDDcd000864.73E-74882No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 106 aa     Download sequence    Send to blast
MEKADLGEVD TDLDPLAGNK ELMMKTLMKS YIRGLMEDCF KKKKKKKFPK GDEKSNLAQS  60
TWLKPRQINN WFINQRKRHW PQAARGESSQ QRHSKSRKLS TTKKK*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14046KKKKKKK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002977601.21e-71homeobox protein knotted-1-like 12
TrEMBLD8S2C35e-71D8S2C3_SELML; KNOX transcription factor
STRINGEFJ216058e-72(Selaginella moellendorffii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP16717148
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G08150.15e-10KNOTTED-like from Arabidopsis thaliana
Publications ? help Back to Top
  1. Banks JA, et al.
    The Selaginella genome identifies genetic changes associated with the evolution of vascular plants.
    Science, 2011. 332(6032): p. 960-3
    [PMID:21551031]