PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

417529

Common Name

SELMODRAFT_417529

Organism

Selaginella moellendorffii

Taxonomic ID

88036

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella

Family

Dof

Protein Properties

Length: 254aa MW: 28297.4 Da PI: 5.1972

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
417529	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	56.6	5.5e-18	52	116	3	60
zf-Dof 3 ekalkcprCdstntkfCyynnysls....qPryfCkaCrryWtkGGalrnv...PvGggrrknkk 60 ++ +cprC+s nt+f yynn + qPry C++C+ Wt+GG +r+v P Gg +r k+ 417529 52 DNVYQCPRCQSYNTRFDYYNNEKSTgkrdQPRYACRSCKGKWTQGGKVRDVslsPTGGNKRTLKS 116 67889**************86533444*******************977778888887665 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	7.0E-10	51	115	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	1.1E-26	52	116	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	15.333	55	113	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 254 aa Download sequence Send to blast
MARASKRSRE DDGIMVLKKK RRLRSERACK LTAQEVRDQN LYGVWEHHDL PDNVYQCPRC 60 QSYNTRFDYY NNEKSTGKRD QPRYACRSCK GKWTQGGKVR DVSLSPTGGN KRTLKSHGRD 120 KITPVVQEEF VGESSQVMGD CVAGFDQTTY WEQGHGLGDC AQPLSHEAFD QNSCWELLPA 180 LGQGPVGDCV QKVFAQASEL GDGVFADQVS QEFVGGVEGG DVQTNCWGQP QEFNDVFLDI 240 EGFLADLPEI QAC*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	16	22	LKKKRRL
2	17	21	KKKRR
3	17	22	KKKRRL

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002992665.1	0.0	uncharacterized protein LOC9630524
TrEMBL	D8S2R9	0.0	D8S2R9_SELML; Uncharacterized protein
STRING	EFJ21141	0.0	(Selaginella moellendorffii)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G55370.3	4e-14	OBF-binding protein 3

Link Out ? help Back to Top
Phytozome	417529
Entrez Gene	9657793

Publications ? help Back to Top
Banks JA, et al. The Selaginella genome identifies genetic changes associated with the evolution of vascular plants. Science, 2011. 332(6032): p. 960-3 [PMID:21551031]