PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

417628

Common Name

SELMODRAFT_417628

Organism

Selaginella moellendorffii

Taxonomic ID

88036

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella

Family

Protein Properties

Length: 167aa MW: 19412.2 Da PI: 9.0114

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
417628	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	36.8	6.8e-12	62	143	2	83
EEE-..-HHHHTT-EE--HHH.HTT...---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEE CS B3 2 fkvltpsdvlksgrlvlpkkfaeeh...ggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFk 83 k lt+ dv +++ l+++ + ++ + e++ + + de+g +We+ + +k++++ + t+ W ++v++n L+egD+v F+ 417628 62 GKRLTKGDVDTLDTLIFSVHEESKLprlD--DDEKIPMEFVDEKGAVWEFGY--KKGKRGpSLVTNQWIQYVRENSLQEGDIVCFY 143 57788889999998888888866669554..4456679999*********..77777778999******************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101936	5.36E-13	58	144	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	4.55E-16	59	161	No hit	No description
Gene3D	G3DSA:2.40.330.10	9.9E-15	59	144	IPR015300	DNA-binding pseudobarrel domain
SMART	SM01019	0.0018	61	161	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	8.628	61	166	IPR003340	B3 DNA binding domain
Pfam	PF02362	8.0E-9	63	143	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 167 aa Download sequence Send to blast
MVDQELREPK RRKVDGDEGV NLGKYSCHQM DSTSSSYTKW RPQKYDRPLN ITDKAHWFPL 60 FGKRLTKGDV DTLDTLIFSV HEESKLPRLD DDEKIPMEFV DEKGAVWEFG YKKGKRGPSL 120 VTNQWIQYVR ENSLQEGDIV CFYKKMLMNP LAPKFGITFF KIPKSN*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	D8S324	1e-121	D8S324_SELML; Uncharacterized protein
STRING	EFJ21191	1e-121	(Selaginella moellendorffii)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G01500.1	4e-09	B3 family protein

Link Out ? help Back to Top
Phytozome	417628
Entrez Gene	9656456

Publications ? help Back to Top
Banks JA, et al. The Selaginella genome identifies genetic changes associated with the evolution of vascular plants. Science, 2011. 332(6032): p. 960-3 [PMID:21551031]