PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

419157

Common Name

SELMODRAFT_419157

Organism

Selaginella moellendorffii

Taxonomic ID

88036

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella

Family

Trihelix

Protein Properties

Length: 147aa MW: 16686.6 Da PI: 7.092

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
419157	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	25.9	2.5e-08	93	127	1	36
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevsk 36 +W+ +e +aLi++r +me++++rg + +lWee+++ 419157 93 EWPSDEARALIKIRGDMESSFQRG-SHPHLWEEIAR 127 5*********************.899****97 PP

Sequence ? help Back to Top
Protein Sequence Length: 147 aa Download sequence Send to blast
MSPPLPVQAP PQPQHQQQHF VRDHHAHLQY LAHNLHANPP PHDPLASSSF KHLLSSCSMA 60 MARIPSDLGQ QHDHPQRWQE SDRGDHREDG SGEWPSDEAR ALIKIRGDME SSFQRGSHPH 120 LWEEIARLKH KASVQGQLSW ILDTRI*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024542989.1	1e-67	trihelix transcription factor GT-2-like
Refseq	XP_024542990.1	1e-67	trihelix transcription factor GT-2-like
TrEMBL	D8S815	1e-101	D8S815_SELML; Uncharacterized protein
STRING	EFJ19338	1e-102	(Selaginella moellendorffii)

Link Out ? help Back to Top
Phytozome	419157
Entrez Gene	9634458

Publications ? help Back to Top
Banks JA, et al. The Selaginella genome identifies genetic changes associated with the evolution of vascular plants. Science, 2011. 332(6032): p. 960-3 [PMID:21551031]