PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

419614

Common Name

SELMODRAFT_419614

Organism

Selaginella moellendorffii

Taxonomic ID

88036

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella

Family

Protein Properties

Length: 296aa MW: 32382.8 Da PI: 7.7367

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
419614	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	45.6	1.3e-14	4	89	1	95
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 f+k+ + + +l ++ v+p f++ g +++ ltl ++sg sW+v + r sg ++l kGW++F+ +n+L D+v+ k+++ s+ +v+ 419614 4 FCKAIKAKENLHTC--VVPEGFLDGDGVVPA---NLTLANSSGSSWSVAI--REDSGDFLLDKGWRSFCLDNELSLDDVVLMKRIQPSN--VLVT 89 66777666666666..99***77777754...5***********..****************************9776433..3555 PP
2	B3	30.9	4.8e-10	220	293	15	96
-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS B3 15 rlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 l++ k+f e+++ k ++ ++l +++ +++ + r+v ++GW++F++a ++k+gD +v++++++s+f +++v 419614 220 YLIVHKQFSEAFMPK--VDTAVMLVNSRDERFPARW--LAA--RHVVSGGWRGFARAEKIKVGDALVLEVVDESTF--KIHV 293 578889999888533..45689***********9..444..599*********************9998999..5555 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM01019	1.3E-7	4	94	IPR003340	B3 DNA binding domain
Pfam	PF02362	6.2E-12	4	88	IPR003340	B3 DNA binding domain
Gene3D	G3DSA:2.40.330.10	5.5E-13	4	96	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	4.68E-9	4	91	No hit	No description
SuperFamily	SSF101936	3.53E-13	28	98	IPR015300	DNA-binding pseudobarrel domain
PROSITE profile	PS50863	11.194	34	94	IPR003340	B3 DNA binding domain
Gene3D	G3DSA:2.40.330.10	8.0E-14	199	295	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	2.35E-14	200	295	IPR015300	DNA-binding pseudobarrel domain
PROSITE profile	PS50863	10.362	206	295	IPR003340	B3 DNA binding domain
SMART	SM01019	0.003	210	295	IPR003340	B3 DNA binding domain
CDD	cd10017	1.44E-11	211	294	No hit	No description
Pfam	PF02362	1.4E-7	221	294	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 296 aa Download sequence Send to blast
MATFCKAIKA KENLHTCVVP EGFLDGDGVV PANLTLANSS GSSWSVAIRE DSGDFLLDKG 60 WRSFCLDNEL SLDDVVLMKR IQPSNVLVTI YGGDGCERKK SQSCDIAKAN NPFGSEVNSG 120 NNCKQETRDR ITADDYHEII DNGNILKRSM DHPEVPLKKR AKTTVGSEKS TAKKLIKVTL 180 SCSSRTVSSE SAIAAASKFE CSNPSVLLAT TKSTLDPTYY LIVHKQFSEA FMPKVDTAVM 240 LVNSRDERFP ARWLAARHVV SGGWRGFARA EKIKVGDALV LEVVDESTFK IHVFE*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	156	162	LKKRAKT

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024522101.1	0.0	uncharacterized protein LOC112343215
TrEMBL	D8S9H8	0.0	D8S9H8_SELML; Uncharacterized protein
STRING	EFJ18820	0.0	(Selaginella moellendorffii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP11590	4	7

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G19184.1	2e-13	B3 family protein

Link Out ? help Back to Top
Phytozome	419614
Entrez Gene	9649640

Publications ? help Back to Top
Banks JA, et al. The Selaginella genome identifies genetic changes associated with the evolution of vascular plants. Science, 2011. 332(6032): p. 960-3 [PMID:21551031]