PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

419761

Common Name

SELMODRAFT_419761

Organism

Selaginella moellendorffii

Taxonomic ID

88036

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella

Family

EIL

Protein Properties

Length: 608aa MW: 69100.6 Da PI: 10.201

Description

EIL family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
419761	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	EIN3	260	1.1e-79	4	235	1	214
XXXXXXXXXXXXXXXXXXXXXXX..XXXXX.XXXXXXX............................XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS EIN3 1 eelkkrmwkdqmllkrlkerkkqlledkeaatgakksn............................ksneqarrkkmsraQDgiLkYMlkemevcnaqGfvYg 75 +el+kr w d+ +lkr+k+++k +++++ ++ + sn +s+eq+ r+kmsraQ giLkY lk+mevc+aqGfvYg 419761 4 DELEKRIWNDRLRLKRIKDKQKARVNNAFSS---NHSNhshgqqqqqhhggpaaqhqnlgnlpkhkQSQEQS-RRKMSRAQVGILKYTLKMMEVCKAQGFVYG 102 79******************998555554...223333466677799************8888887.889*********************** PP XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.......XX----STTS-HHHHHHHHHHHSSSSSS-TTS--TTT--HHHH--- CS EIN3 76 iipekgkpvegasdsLraWWkekvefdrngpaaiskyqaknlilsgessl...qtersseshslselqDTtlgSLLsalmqhcdppqrrfplekgvepPWWPt 175 iipekgkpv+gas+++raWWkekv+fdrngpaa++ky+a++ i s++ + +++ ++h+l+elq Tt S ++ qrr+plekgv+pPWWP+ 419761 103 IIPEKGKPVSGASNNIRAWWKEKVRFDRNGPAAMAKYEAEHGICSRSGGGagqLSAAAPTPHTLQELQGTTQCS---------TAIQRRYPLEKGVAPPWWPS 196 ***************************************98765542213568899******9665.........9*************** PP S--HHHHHHT--TT--.-----GGG--HHHHHHHHHHHH CS EIN3 176 GkelwwgelglskdqgtppykkphdlkkawkvsvLtavi 214 G+e+ww+elgl+k qg+ppykkphdlkk+wkv+vLta+ 419761 197 GDEEWWPELGLPKGQGPPPYKKPHDLKKVWKVGVLTADC 235 **********************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04873	1.1E-77	4	236	No hit	No description
Gene3D	G3DSA:1.10.3180.10	1.2E-35	158	270	IPR023278	Ethylene insensitive 3-like protein, DNA-binding domain
SuperFamily	SSF116768	1.15E-23	164	233	IPR023278	Ethylene insensitive 3-like protein, DNA-binding domain
PROSITE profile	PS51382	27.094	388	606	IPR004331	SPX domain
Pfam	PF03105	6.1E-14	388	432	IPR004331	SPX domain
CDD	cd14476	1.40E-47	389	594	No hit	No description
Pfam	PF03105	3.2E-7	467	541	IPR004331	SPX domain
Pfam	PF03105	8.9E-16	549	597	IPR004331	SPX domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 608 aa Download sequence Send to blast
MDVDELEKRI WNDRLRLKRI KDKQKARVNN AFSSNHSNHS HGQQQQQHHG GPAAQHQNLG 60 NLPKHKQSQE QSRRKMSRAQ VGILKYTLKM MEVCKAQGFV YGIIPEKGKP VSGASNNIRA 120 WWKEKVRFDR NGPAAMAKYE AEHGICSRSG GGAGQLSAAA PTPHTLQELQ GTTQCSTAIQ 180 RRYPLEKGVA PPWWPSGDEE WWPELGLPKG QGPPPYKKPH DLKKVWKVGV LTADCDEDNP 240 WDIGLPWIEV LARQDDCQGE RDVDLGTPPR LGTLLGLSSL ISGSERPEVL AFLAKNRAES 300 GKEKEKRREG SKFLSEQRAL TSRTRQAPSI PSLAPPSSPS SPLRPLSTFG RASDETKRSI 360 SVISRKKHRR QKSLKKHSHH FLQLSDMVKF QKQLEGQLVP EWRVKYCDYK QLKKVVKRIK 420 NQILHTKNQQ HKVFDPNVFS VDKSKLQNLL QNPSAILSSC CEQSISSETS MDVVHKTRIA 480 DGEDFYETEL FGTRSDHEKS FFFGLDDQHN KVDKFFRCKE DEYDAQAQQL HIQMQELIAM 540 QELEGEPGNK GKVQRAAKML QTAFVEFYRG LRLLRNFSSL NVMAFVKIRK KYDKMVESSH 600 FATSDKV*

Sequence ? help Back to Top

Protein Sequence Length: 608 aa Download sequence Send to blast

MDVDELEKRI WNDRLRLKRI KDKQKARVNN AFSSNHSNHS HGQQQQQHHG GPAAQHQNLG  60
NLPKHKQSQE QSRRKMSRAQ VGILKYTLKM MEVCKAQGFV YGIIPEKGKP VSGASNNIRA  120
WWKEKVRFDR NGPAAMAKYE AEHGICSRSG GGAGQLSAAA PTPHTLQELQ GTTQCSTAIQ  180
RRYPLEKGVA PPWWPSGDEE WWPELGLPKG QGPPPYKKPH DLKKVWKVGV LTADCDEDNP  240
WDIGLPWIEV LARQDDCQGE RDVDLGTPPR LGTLLGLSSL ISGSERPEVL AFLAKNRAES  300
GKEKEKRREG SKFLSEQRAL TSRTRQAPSI PSLAPPSSPS SPLRPLSTFG RASDETKRSI  360
SVISRKKHRR QKSLKKHSHH FLQLSDMVKF QKQLEGQLVP EWRVKYCDYK QLKKVVKRIK  420
NQILHTKNQQ HKVFDPNVFS VDKSKLQNLL QNPSAILSSC CEQSISSETS MDVVHKTRIA  480
DGEDFYETEL FGTRSDHEKS FFFGLDDQHN KVDKFFRCKE DEYDAQAQQL HIQMQELIAM  540
QELEGEPGNK GKVQRAAKML QTAFVEFYRG LRLLRNFSSL NVMAFVKIRK KYDKMVESSH  600
FATSDKV*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4zds_A	5e-31	162	257	2	103	Protein ETHYLENE INSENSITIVE 3
4zds_B	5e-31	162	257	2	103	Protein ETHYLENE INSENSITIVE 3
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC158181	0.0	Selaginella moellendorffii clone JGIASXY-5D1, complete sequence

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	D8S9Y9	0.0	D8S9Y9_SELML; Uncharacterized protein
STRING	EFJ19035	0.0	(Selaginella moellendorffii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP563	16	82

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G27050.1	1e-72	ETHYLENE-INSENSITIVE3-like 1

Link Out ? help Back to Top
Phytozome	419761
Entrez Gene	9647033

Publications ? help Back to Top
Banks JA, et al. The Selaginella genome identifies genetic changes associated with the evolution of vascular plants. Science, 2011. 332(6032): p. 960-3 [PMID:21551031]