PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 41981
Organism
Ostreococcus lucimarinus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Bathycoccaceae; Ostreococcus
Family MYB
Protein Properties Length: 99aa    MW: 11342.8 Da    PI: 9.2765
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
41981genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding50.93.6e-16242445
                     S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding  4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45
                     WT +Ede+l+ +++++G ++W++ a+ m  ++t+kqc+ rw 
            41981  2 WTSDEDEKLLALIEKHGARRWNSLASAME-TKTAKQCRRRWS 42
                     *****************************.***********6 PP
2Myb_DNA-binding45.61.6e-145393345
                     SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45
                      WT+ Ed+ l+da+++lG++ W++Ia+ +g gRt++  k+r+ 
            41981 53 EWTEAEDLALLDAHEKLGNK-WTAIAKLVG-GRTDNGAKNRFK 93
                     6*******************.*********.*****8888875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.86E-27192IPR009057Homeodomain-like
PROSITE profilePS5129421.41149IPR017930Myb domain
SMARTSM007177.0E-10247IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.4E-20253IPR009057Homeodomain-like
PfamPF002491.1E-14242IPR001005SANT/Myb domain
CDDcd001674.34E-12241No hitNo description
SMARTSM007172.2E-105098IPR001005SANT/Myb domain
PROSITE profilePS5129415.7325099IPR017930Myb domain
PfamPF002493.7E-135393IPR001005SANT/Myb domain
CDDcd001674.62E-85396No hitNo description
Gene3DG3DSA:1.10.10.606.8E-175498IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 99 aa     Download sequence    Send to blast
MWTSDEDEKL LALIEKHGAR RWNSLASAME TKTAKQCRRR WSGHLTTEIK EHEWTEAEDL  60
ALLDAHEKLG NKWTAIAKLV GGRTDNGAKN RFKALVDKQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A5e-292997104MYB PROTO-ONCOGENE PROTEIN
1mse_C4e-292997104C-Myb DNA-Binding Domain
1msf_C4e-292997104C-Myb DNA-Binding Domain
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0005971e-165CP000597.1 Ostreococcus lucimarinus CCE9901 chromosome 17, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_001422172.11e-65predicted protein, partial
TrEMBLA4SA322e-64A4SA32_OSTLU; Uncharacterized protein (Fragment)
STRINGABP004894e-65(Ostreococcus 'lucimarinus')
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP1516114
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11050.15e-28myb domain protein 64