PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 421085
Common NameSELMODRAFT_421085
Organism
Selaginella moellendorffii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella
Family Trihelix
Protein Properties Length: 726aa    MW: 80387 Da    PI: 7.1362
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
421085genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix56.95.3e-1857138286
  trihelix   2 WtkqevlaLiearremeerlrrgklkkplWeevskkm.rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
               Wt+  + +Li++ +e++++lrrg+lk++ W+ev++ +  + g+ ++  qC++k+e+l+++++++k  +  +    +s++p++d+l+
    421085  57 WTDAATDVLIDVFEEKWNSLRRGNLKAKNWDEVGAELgNRCGVPKTGDQCRHKIEKLRGKFRQEKVVAVLG----QSKWPWYDRLN 138
               *************************************8899****************************97....568*****996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138371.9E-1755139No hitNo description
PfamPF021764.9E-10590648IPR001293Zinc finger, TRAF-type
PROSITE profilePS5014512.184590646IPR001293Zinc finger, TRAF-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009941Cellular Componentchloroplast envelope
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 726 aa     Download sequence    Send to blast
MALHPFAEAN PQQPTPIAAC LPQLMKEDLQ HAHHHHHHHL HELERMSKIP INGKSAWTDA  60
ATDVLIDVFE EKWNSLRRGN LKAKNWDEVG AELGNRCGVP KTGDQCRHKI EKLRGKFRQE  120
KVVAVLGQSK WPWYDRLNMM FGGGGGAAAG GGGNNANDKA PADAKSSQEH SAFHRHQHNS  180
HIVDEDGATA TTTAPAVGFG VVVSNHQHQH HQQQQQHQHH GLELIEARSV HGMGDDERND  240
TSYTSQSGKS TDRDETASPR SKSGGGGSRK RGRESSSSDL GAALKYLSET LIKIEECKVE  300
LQRDNERVRM EMEARRAQMH EVELKRTEML IQMELKRTEM LCELELRRTK MQMDLFENLA  360
GRASSRPKRR DLAMAGEEEQ KSVVVEEKKE EEELSPIILQ ECGYYDVEQL HKATGLLLLT  420
LAAACVEKTI GDPFNQPGSV VGDLKRELIE SLESQSQQYA GAALGSLSDR VQAPKPMKIL  480
QGFLDGFVRS KANLLARVSS RILSNDKKED KIEEFVGELD RSGAWMVGRR EMLARSLLRR  540
IDRSMVAHCE MRFGSSEELA AHKARCALRP TTCTNEGCTD VYSAVQGGGH DARCAFKVLT  600
CEQGCGQSVA RADMDRHCVS VCPMKMVTCP FHHVGCVDRL PQGTVEVHCA GNVSSHLLAV  660
LHVLQRLEVG IASQSQRISN LEKALSKAQV PMDGDAAKLE LEKIKEESRT LEIPAVDVSK  720
LTANH*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024542265.10.0trihelix transcription factor ASIL2-like
TrEMBLD8SE340.0D8SE34_SELML; Uncharacterized protein
STRINGEFJ173620.0(Selaginella moellendorffii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24860.11e-16Trihelix family protein
Publications ? help Back to Top
  1. Banks JA, et al.
    The Selaginella genome identifies genetic changes associated with the evolution of vascular plants.
    Science, 2011. 332(6032): p. 960-3
    [PMID:21551031]