PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

421179

Common Name

SELMODRAFT_421179

Organism

Selaginella moellendorffii

Taxonomic ID

88036

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella

Family

MYB_related

Protein Properties

Length: 257aa MW: 28526.3 Da PI: 9.9933

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
421179	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	23.3	1.5e-07	68	122	4	47
S-HHHHHHHHHHHHHTTTT.............-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 4 WTteEdellvdavkqlGgg.............tWktIartmgkgRtlkqcksrwqky 47 WT eE +++++a k + ++++Ia+ +g +R+ q++ + qky 421179 68 WTNEERQRFKKALKTDT-HfekilrfscsfgtDFAAIAKFVG-TRSSTQVRTHAQKY 122 ***********9765.45889***************.***********9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00717	0.0051	64	125	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	1.17E-7	65	125	IPR009057	Homeodomain-like
Pfam	PF00249	4.1E-6	67	122	IPR001005	SANT/Myb domain
CDD	cd00167	2.94E-6	68	122	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 257 aa Download sequence Send to blast
MQAPRRQFLC PKFEIEPLDM AGSAMQMVPA PHLWMKQLLV LRAQGHQESL QSENKVKFSQ 60 RVSESRYWTN EERQRFKKAL KTDTHFEKIL RFSCSFGTDF AAIAKFVGTR SSTQVRTHAQ 120 KYYAKLIRDY KRSGKAQAAA ASGVKDKSGA ANARIATESS YIRNNACPQP FGELQATRDL 180 SASVPNWKSV RARDKVEEIA LSDEDEEDDT AAETLAVDTG GSGKSAVRSC KDSCGVHQKV 240 GDQAARKLSR AKCLMQ*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024542553.1	9e-93	myb-like protein I
TrEMBL	D8SE96	0.0	D8SE96_SELML; Uncharacterized protein
STRING	EFJ17165	0.0	(Selaginella moellendorffii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP11644	4	7

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G09600.2	3e-07	MYB_related family protein

Link Out ? help Back to Top
Phytozome	421179
Entrez Gene	9633885

Publications ? help Back to Top
Banks JA, et al. The Selaginella genome identifies genetic changes associated with the evolution of vascular plants. Science, 2011. 332(6032): p. 960-3 [PMID:21551031]