PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 42308
Organism
Ostreococcus lucimarinus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Bathycoccaceae; Ostreococcus
Family CPP
Protein Properties Length: 151aa    MW: 16482.5 Da    PI: 8.4509
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
42308genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR49.39.8e-162968242
    TCR  2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkeek 42
           ++k+CnCk+skClk+YCeCfa+gk+C+  C+C +CkN++e+
  42308 29 QRKRCNCKNSKCLKLYCECFASGKYCDA-CNCAGCKNNDEH 68
           689************************9.********9986 PP
2TCR49.11.2e-15114151138
    TCR   1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkN 38 
            ++++gC+Ck+s ClkkYCeCf+a  +C e+C+C +CkN
  42308 114 RHNRGCHCKRSGCLKKYCECFQAAIYCVERCRCAECKN 151
            5899*********************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011141.7E-152868IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163433.67829151IPR005172CRC domain
PfamPF036385.9E-123165IPR005172CRC domain
SMARTSM011143.4E-10114151IPR033467Tesmin/TSO1-like CXC domain
PfamPF036383.5E-12117151IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 151 aa     Download sequence    Send to blast
MRAGDDAIAS ASPRSIAARA STPRDSASQR KRCNCKNSKC LKLYCECFAS GKYCDACNCA  60
GCKNNDEHAH ERQSAIEQTL ERNPNAFRPK IINQTTNGTL DGAGAGDGAT TEARHNRGCH  120
CKRSGCLKKY CECFQAAIYC VERCRCAECK N
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A3e-30251515120Protein lin-54 homolog
5fd3_B3e-30251515120Protein lin-54 homolog
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPlays a role in development of both male and female reproductive tissues. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00269DAPTransfer from AT2G20110Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0005990.0CP000599.1 Ostreococcus lucimarinus CCE9901 chromosome 19, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_001422401.11e-106predicted protein, partial
SwissprotQ9SL704e-49TCX6_ARATH; Protein tesmin/TSO1-like CXC 6
TrEMBLA4SAJ71e-104A4SAJ7_OSTLU; Uncharacterized protein (Fragment)
STRINGABP007181e-105(Ostreococcus 'lucimarinus')
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP3231530
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20110.19e-45Tesmin/TSO1-like CXC domain-containing protein