PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

423935

Common Name

SELMODRAFT_423935

Organism

Selaginella moellendorffii

Taxonomic ID

88036

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella

Family

G2-like

Protein Properties

Length: 341aa MW: 38533 Da PI: 7.4429

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
423935	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	104.4	6.7e-33	77	130	2	55
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 prlrWtp+LHe+Fv+av++LGG+++AtPk +l+lm+vkgLt++hvkSHLQ+YR+ 423935 77 PRLRWTPDLHECFVRAVDRLGGQDRATPKLVLQLMGVKGLTIAHVKSHLQMYRS 130 8****************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	12.316	73	133	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	1.5E-32	73	132	IPR009057	Homeodomain-like
SuperFamily	SSF46689	6.63E-16	75	133	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.3E-23	77	131	IPR006447	Myb domain, plants
Pfam	PF00249	1.2E-9	78	129	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 341 aa Download sequence Send to blast
MQLEVEMDQG ASSPPLHNSR KRLSSVEEDD LDAPGSSDSN NTVSGDGSSD GATVLGGPFG 60 SSSARSSVRQ YIRSKMPRLR WTPDLHECFV RAVDRLGGQD RATPKLVLQL MGVKGLTIAH 120 VKSHLQMYRS MKNDENGPVV MEERKGEQAQ AAVASDASLL HHPWTPQLQQ IRGEKKCRDN 180 PNAQQQYYAH NYFHRPVLQP LDCHARTEDA WSQIASPNQS QEWLSRLSIA ATKCYSERFN 240 DLQIGWRKNH HTLFQQTGGD DNTLRSRSLE REESRIHSSI LLSQNRINSC PALIHFDEIL 300 EGSRSAMKHH ENFNFHPQKL CYITDLCTKT TLEPRELTFY *

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4r_A	4e-19	78	132	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	4e-19	78	132	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	4e-19	78	132	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	4e-19	78	132	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00297	DAP	Transfer from AT2G38300	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024545718.1	0.0	protein PHOSPHATE STARVATION RESPONSE 3
TrEMBL	D8SNA0	0.0	D8SNA0_SELML; Uncharacterized protein
STRING	EFJ14034	0.0	(Selaginella moellendorffii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP285	15	123

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G38300.1	2e-33	G2-like family protein

Link Out ? help Back to Top
Phytozome	423935
Entrez Gene	9645119

Publications ? help Back to Top
Banks JA, et al. The Selaginella genome identifies genetic changes associated with the evolution of vascular plants. Science, 2011. 332(6032): p. 960-3 [PMID:21551031]