PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information? help Back to Top

TF ID

42504

Common Name

MICPUCDRAFT_42504

Organism

Taxonomic ID

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Mamiellaceae; Micromonas; Micromonas pusilla

Family

Protein Properties

Length: 195aa MW: 22185.2 Da PI: 6.9633

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
42504	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	46.7	6.1e-15	6	48	10	52
RWP-RK 10 lskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 l++ l+ ++AA+ ++++T K +CR +GI+RWP+Rk+ sl 42504 6 LASVALLTEAEAARAFNMGTTRFKARCRTLGIARWPYRKLMSL 48 56666667789*****************************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	13.617	1	69	IPR003035	RWP-RK domain
Pfam	PF02042	2.4E-14	1	48	IPR003035	RWP-RK domain

Sequence ? help Back to Top
Protein Sequence Length: 195 aa Download sequence Send to blast
MTKTSLASVA LLTEAEAARA FNMGTTRFKA RCRTLGIARW PYRKLMSLKN LYYDLTVHLK 60 RALDGNDVDM EERARAMMEE IKTYAALLES DLSLLNSFYN GKKAWPDHIL KIRQTIYKKR 120 HAEVLVNKKI AAKNAKSEQV AARAFSDASD FDSRDDDRLS DDDSMQTDRD GAGIEEYAHE 180 WWQLALEEPN FAIA*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003063070.1	1e-141	predicted protein
TrEMBL	C1N4X2	1e-140	C1N4X2_MICPC; Predicted protein
STRING	XP_003063070.1	1e-141	(Micromonas pusilla)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Chlorophytae	OGCP9434	4	4

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G18790.1	4e-10	RWP-RK domain-containing protein

Link Out ? help Back to Top
Phytozome	42504
Entrez Gene	9688308

Publications ? help Back to Top
Worden AZ, et al. Green evolution and dynamic adaptations revealed by genomes of the marine picoeukaryotes Micromonas. Science, 2009. 324(5924): p. 268-72 [PMID:19359590]